1. 2020
  2. Published

    An evolutionary model that satisfies detailed balance

    Lember, J. & Watkins, C., 9 Nov 2020, In: Methodology and Computing in Applied Probability. 37 p.

    Research output: Contribution to journalArticlepeer-review

  3. E-pub ahead of print

    Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group

    Research Data Alliance & Shanahan, H., 9 Nov 2020, In: Wellcome Open Research. 267.

    Research output: Contribution to journalArticlepeer-review

  4. Published

    Feeder-Level Deep Learning-based Photovoltaic Penetration Estimation Scheme

    Zhang, X., Kuenzel, S. & Watkins, C., 13 Oct 2020.

    Research output: Contribution to conferencePaperpeer-review

  5. Published

    Predicting the Frequencies of Drug Side effects

    Galeano, D., Li, S., Gerstein, M. & Paccanaro, A., 11 Sep 2020, In: Nature Communications. 11, p. 1-14 14 p., 4575.

    Research output: Contribution to journalArticlepeer-review

  6. E-pub ahead of print

    Epidemic contact tracing with smartphone sensors

    Nguyen, D. K. A., Luo, Z. & Watkins, C., 1 Sep 2020, In: Journal of Location Based Services. 37 p.

    Research output: Contribution to journalArticlepeer-review

  7. Published

    What is semantic diversity and why does it facilitate visual word recognition?

    Cevoli, B., Watkins, C. & Rastle, K., 14 Jul 2020, In: Behavior Research Methods. p. 1-17 17 p.

    Research output: Contribution to journalArticlepeer-review

  8. Published

    Transatlantic Perspectives on the Use of Data Science in Museums and Heritage

    Platts, H., Howard, D., Dalton, P. & Watkins, C., Jul 2020, UK Research and Innovation.

    Research output: Chapter in Book/Report/Conference proceedingOther contribution

  9. Published

    RDA COVID-19 Recommendations and Guidelines on Data Sharing

    Research Data Alliance COVID-19 Working Group, 30 Jun 2020, 144 p.

    Research output: Book/ReportBook

  10. Published

    Privacy-Functionality Trade-off: A Privacy-Preserving Multi-Channel Smart Metering System

    Zhang, X., Kuenzel, S., Córdoba-Pachón, J-R. & Watkins, C., 21 Jun 2020, In: Energies. 13, 12, p. 1-30 30 p., 3221.

    Research output: Contribution to journalArticlepeer-review

  11. Published

    The Corrected Gene Proximity map for analyzing the 3D genome organization using Hi-C data

    Ye, C., Paccanaro, A., Gerstein, M. & Yan, K-K., 29 May 2020, In: BMC Bioinformatics. 21, p. 1-18 18 p., 222.

    Research output: Contribution to journalArticlepeer-review

  12. Published

    Anomaly Detection in Video Games

    Wilkins, B., Watkins, C. & Stathis, K., 20 May 2020, In: ArXiv.org. p. 1-4 4 p., 2005.10211.

    Research output: Contribution to journalArticle

  13. Published

    Network modeling of patients’ biomolecular profiles for clinical phenotype/outcome prediction

    Gliozzo, J., Perlasca, P., Mesiti, M., Casiraghi, E., Vallacchi, V., Vergani, E., Frasca, M., Grossi, G., Petrini, A., Re, M., Paccanaro, A. & Valentini, G., 27 Feb 2020, In: Scientific Reports. 10, p. 1-15 15 p., 3612.

    Research output: Contribution to journalArticlepeer-review

  14. Published

    Structuring Time Series Data to Gain Insight into Agent Behaviour

    Al-Baghdadi, N., Wisniewski, W., Lindsay, D., Lindsay, S., Kalnishkan, Y. & Watkins, C., 24 Feb 2020, Proceedings of the 3rd International Workshop on Big Data for Financial News and Data. IEEE, p. 5480-5490 11 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  15. E-pub ahead of print

    Helping the Consumers and Producers of Standards, Repositories and Policies to Enable FAIR Data

    McQuilton, P., Batista, D., Beyan, O., Granell, R., Coles, S., Izzo, M., Lister, A. L., Pergl, R., Rocca-Serra, P., Schaap, B., Shanahan, H., Thurston, M. & Sansone, S-A., 31 Jan 2020, In: Data Intelligence. 2, 1-2, p. 151-157 7 p.

    Research output: Contribution to journalArticlepeer-review

  16. 2019
  17. Published

    The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

    Bhat, P., Torres Bobadilla, M., Paccanaro, A., Yang, H. & Romero, A. E., 19 Nov 2019, In: Genome Biology. 20, p. 1-23 23 p., 244 (2019).

    Research output: Contribution to journalArticlepeer-review

  18. Published

    Location Tracking Using Smartphone Accelerometer and Magnetometer Traces

    Nguyen, D. K. A., Akram, R. N., Markantonakis, K., Luo, Z. & Watkins, C., 26 Aug 2019, The First Location Privacy Workshop (LPW 2019), the 14th International Conference on Availability, Reliability and Security (ARES 2019). Association for Computing Machinery (ACM), p. 1-9 9 p. 96

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  19. E-pub ahead of print

    Explaining Deep Learning Models with Constrained Adversarial Examples

    Moore, J., Hammerla, N. & Watkins, C., 23 Aug 2019, Pacific Rim International Conference on Artificial Intelligence. Springer, p. 43-56 14 p. (Lecture Notes in Computer Science; vol. 11670).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  20. Published

    Disease gene prediction for molecularly uncharacterized diseases

    Caceres, J. & Paccanaro, A., 5 Jul 2019, In: PLoS Computational Biology. 15, 7, p. 1-14 14 p., e1007078.

    Research output: Contribution to journalArticlepeer-review

  21. Submitted

    Teaching FAIR

    Shanahan, H., 4 May 2019, (Submitted) In: Data Intelligence.

    Research output: Contribution to journalArticlepeer-review

  22. Submitted

    9 Simple recommendations for teaching data skills

    Shanahan, H., 16 Apr 2019, (Submitted) In: Data Science Journal.

    Research output: Contribution to journalArticlepeer-review

  23. Submitted

    Embedding Open Science practice into Data Science Training

    Shanahan, H., 1 Jan 2019, (Submitted).

    Research output: Contribution to conferencePosterpeer-review

  24. Forthcoming

    Learning interpretable disease self-representations for drug repositioning

    Galeano Galeano, D., Frasca, F., Gonzalez, G., Lapanogov, I., Veselkov, K., Paccanaro, A. & Bronstein, M. M., 2019, (Accepted/In press) Conference on Neural Information Processing Systems (NeurIPS) 2019: Graph representation Learning Workshop .

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  25. 2018
  26. Published

    Transcriptomics: Quantifying Non-Uniform Read Distribution Using MapReduce

    Alnasir, J. & Shanahan, H., 27 Dec 2018, In: International Journal for the Foundations of Computer Science. 29, 8, 20 p.

    Research output: Contribution to journalArticlepeer-review

  27. Published

    The application of Hadoop in structural bioinformatics

    Alnasir, J. & Shanahan, H., 20 Nov 2018, In: Briefings in Bioinformatics. p. 1-10 10 p., bby106.

    Research output: Contribution to journalArticlepeer-review

  28. Published

    Systems Metagenomics

    Shanahan, H. & Radwan, G., 15 Jul 2018.

    Research output: Contribution to conferencePosterpeer-review

  29. Published

    Subclonal mutation selection in mouse lymphomagenesis identifies known cancer loci and suggests novel candidates

    Webster, P., Dawes, J., Dewchand, H., Takacs, K., Iadarola, B., Bolt, B., Caceres Silva, J., Kaczor, J., Dharmalingam, G., Dore, M., Game, L., Adejumo, T., Elliott, J., Naresh, K., Karimi, M., Rekopoulou, K., Tan, G., Paccanaro, A. & Uren, A., 9 Jul 2018, In: Nature Communications. 9, p. 1-14 14 p., 2649.

    Research output: Contribution to journalArticlepeer-review

  30. Published

    Systems Metagenomics: Profiling short-read microbiome data using population-based k-mer identification

    Shanahan, H. & Radwan, G., 6 Jul 2018.

    Research output: Contribution to conferencePosterpeer-review

  31. Submitted

    “Ethics When You Least Expect It”: A Modular Approach to Data Ethics Instruction

    Shanahan, H., Bezuidenhout, L. & Quick, R., 2018, (Submitted).

    Research output: Contribution to conferencePaperpeer-review

  32. Published

    A Recommender System Approach for Predicting Drug Side Effects

    Galeano Galeano, D. & Paccanaro, A., 2018, IJCNN 2018: International Joint Conference on Neural Networks. IEEE Xplore, p. 1-7 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  33. 2017
  34. Published

    Drug cocktail selection for the treatment of chagas disease: A multi-objective approach

    Torres Bobadilla, M., Caceres Silva, J., Jimenez, R., Yubero, V., Vega, C., Rolón, M., Cernuzzi, L., Barán, B. & Paccanaro, A., 21 Dec 2017, SLIOIA - Simposio Latinoamericano de Investigación de Operaciones e Inteligencia Artificial 2017. p. 1-5 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  35. Published

    Co-location epidemic tracking on London public transports using low power mobile magnetometer

    Nguyen, D. K. A., Watkins, C. & Luo, Z., 23 Nov 2017, The 8th International Conference on Indoor Positioning and Indoor Navigation, Sept 18-21, 2017, Japan. IEEE, p. 1-8 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  36. Published

    Neurogenomic Signatures of Successes and Failures in Life-History Transitions in a Key Insect Pollinator

    Manfredini, F., Romero Lopez, A., Pedroso Rovira, I., Paccanaro, A., Sumner, S. & Brown, M., 1 Nov 2017, In: Genome Biology and Evolution. 9, 11, p. 3059-3072 14 p.

    Research output: Contribution to journalArticlepeer-review

  37. Published

    Conformal prediction of biological activity of chemical compounds

    Toccaceli, P., Nouretdinov, I. & Gammerman, A., Oct 2017, In: Annals of Mathematics and Artificial Intelligence. 81, p. 105–123 19 p.

    Research output: Contribution to journalArticlepeer-review

  38. Published

    Criteria of efficiency for set-valued classification

    Vovk, V., Nouretdinov, I., Fedorova, V., Petej, I. & Gammerman, A., Oct 2017, In: Annals of Mathematics and Artificial Intelligence. 81, p. 21-46 26 p.

    Research output: Contribution to journalArticlepeer-review

  39. Published

    Biological Big Bytes: Integrative Analysis of Large Biological Datasets

    Shanahan, H., Chen, M., Harrison, A. & Orlov, Y., 13 Sep 2017, In: Journal of Integrative Bioinformatics. 14, 3, 2 p.

    Research output: Contribution to journalEditorial

  40. Published

    An Exploratory Analysis on Drug Target Locality

    Caceres Silva, J. & Paccanaro, A., Sep 2017, AGRANDA - Simposio Argentino de GRANdes DAtos 2017.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  41. Published

    Combination of Conformal Predictors for Classification

    Toccaceli, P. & Gammerman, A., 13 Jun 2017, Proceedings of Machine Learning Research. Lawrence, N. & Reid, M. (eds.). Vol. 60. p. 39-61 23 p. (The Proceedings of Machine Learning Research; vol. 60).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  42. Published

    Valid Probabilistic Prediction of Life Status after Percutaneous Coronary Intervention procedure

    Volkhonskiy, D., Nouretdinov, I., Gammerman, A. & Lim, P., Jun 2017, 6th Symposium on Conformal and Probabilistic Prediction with Applications (COPA 2017).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  43. Published

    Drug targets prediction using chemical similarity

    Galeano Galeano, D. & Paccanaro, A., 26 Jan 2017, XLII Conferencia Latinoamericana de Informatica (CLEI). IEEE Xplore, p. 1-7 7 p. (2016 XLII Latin American Computing Conference (CLEI)).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  44. Published

    A Novel Method to Detect Bias in Short Read NGS Data

    Alnasir, J. & Shanahan, H., 2017, In: Journal of Integrative Bioinformatics. 14, 3, p. 1-9 9 p.

    Research output: Contribution to journalArticlepeer-review

  45. Published

    Inductive Conformal Martingales for Change-Point Detection

    Volkhonskiy, D., Burnaev, E., Nouretdinov, I., Gammerman, A. & Vovk, V., 2017, 6th Symposium on Conformal and Probabilistic Prediction with Applications (COPA 2017). p. 1-22 22 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  46. Published

    Mining the biomedical literature to predict shared drug targets in DrugBank

    Caniza Vierci, H., Galeano Galeano, D. & Paccanaro, A., 2017, XLIII Conferencia Latinoamericana en Informática CLEI 2017. IEEE Xplore, p. 1-5 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  47. 2016
  48. Published
  49. Published

    Internet discussion forums: Maximizing choice in health-seeking behaviour during public health emergencies

    Cole, J., Kleine, D. & Watkins, C., 13 Jun 2016, 2016 International Conference On Cyber Situational Awareness, Data Analytics And Assessment (CyberSA). Onwubiko, C. (ed.). London: IEEE, p. 99 104 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  50. Published
  51. Published

    mutation3D: Cancer Gene Prediction Through Atomic Clustering of Coding Variants in the Structural Proteome

    Meyer, M. J., Lapcevic, R., Romero, A. E., Yoon, M., Das, J., Beltrán, J. F., Mort, M., Stenson, P. D., Cooper, D. N., Paccanaro, A. & Yu, H., May 2016, In: Human Mutation. 37, 5, p. 447-456 10 p.

    Research output: Contribution to journalArticlepeer-review

  52. Published

    Conformal Predictors for Compound Activity Prediction

    Toccaceli, P., Nouretdinov, I. & Gammerman, A., 17 Apr 2016, Conformal and Probabilistic Prediction with Applications: 5th International Symposium, COPA 2016 Madrid, Spain, April 20–22, 2016 Proceedings. Springer, Vol. 9653. p. 51-66 16 p. (Lecture Notes in Computer Science; vol. 9653).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  53. Published

    Criteria of Efficiency for Conformal Prediction

    Vovk, V., Fedorova, V., Nouretdinov, I. & Gammerman, A., 17 Apr 2016, Conformal and Probabilistic Prediction with Applications: 5th International Symposium, COPA 2016 Madrid, Spain, April 20–22, 2016 Proceedings. Springer, Vol. 9653. p. 23-39 17 p. (Lecture Notes in Computer Science; vol. 9653).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  54. Published

    Health Advice from Internet Discussion Forums: How Bad is Dangerous?

    Cole, J., Watkins, C. & Kleine, D., 6 Jan 2016, In: Journal of Medical Internet Research. 18, 1, p. 1-15 15 p., e4.

    Research output: Contribution to journalArticlepeer-review

  55. 2015
  56. Published

    Hypergraphical Conformal Predictors

    Fedorova, V., Gammerman, A., Nouretdinov, I. & Vovk, V., 21 Dec 2015, In: International Journal on Artificial Intelligence Tools. 24, 6, 1560003.

    Research output: Contribution to journalArticlepeer-review

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