1. Published

    Y spectrum from NRQCD with improved action

    Manke, T., Drummond, I. T., Horgan, R. R. & Shanahan, H. P., 11 Sep 1997, In: Physics Letters B. 408, 1-4, p. 308-314 7 p.

    Research output: Contribution to journalArticlepeer-review

  2. Published

    What is semantic diversity and why does it facilitate visual word recognition?

    Cevoli, B., Watkins, C. & Rastle, K., 14 Jul 2020, In: Behavior Research Methods. p. 1-17 17 p.

    Research output: Contribution to journalArticlepeer-review

  3. Published

    Valid Probabilistic Prediction of Life Status after Percutaneous Coronary Intervention procedure

    Volkhonskiy, D., Nouretdinov, I., Gammerman, A. & Lim, P., Jun 2017, 6th Symposium on Conformal and Probabilistic Prediction with Applications (COPA 2017).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  4. Published

    Valid predictions with confidence estimation in an air pollution problem.

    Ivina, O., Nouretdinov, I. & Gammerman, A., 17 Jun 2012, In: Progress in Artificial Intelligence. 1, p. 235-243 9 p.

    Research output: Contribution to journalArticlepeer-review

  5. Published

    Valid prediction with confidence estimation in air pollution problem

    Ivina, O., Nouretdinov, I. & Gammerman, A., Jul 2011, p. 45. 1 p.

    Research output: Contribution to conferenceAbstract

  6. Published

    Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins

    Jones, S., Shanahan, H. P., Berman, H. M. & Thornton, J. M., 15 Dec 2003, In: Nucleic Acids Research. 31, 24, p. 7189-7198 10 p.

    Research output: Contribution to journalArticlepeer-review

  7. Published

    Universal portfolio selection

    Vovk, V. & Watkins, C. J. H. C., 1998, Proceedings of the Eleventh Annual Conference on Computational Learning Theory. New York: ACM Press, p. 12-23 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  8. Published

    Transductive Confidence Machine is universal

    Nouretdinov, I., Vyugin, V. & Gammerman, A., 2003, Lecture Notes in Artificial Intelligence. Springer, Vol. 2842. p. 283-297 16 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  9. Published

    Transduction with confidence and credibility

    Saunders, C., Gammerman, A. & Vovk, V., 1999, Proceedings of the Sixteenth International Joint Conference on Articial Intelligence. Dean, T. (ed.). San Francisco, CA: Morgan Kaufmann, Vol. 2. p. 722-726 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  10. Published
  11. Published
  12. Published

    Transcriptomics: Quantifying Non-Uniform Read Distribution Using MapReduce

    Alnasir, J. & Shanahan, H., 27 Dec 2018, In: International Journal for the Foundations of Computer Science. 29, 8, 20 p.

    Research output: Contribution to journalArticlepeer-review

  13. Published

    Transatlantic Perspectives on the Use of Data Science in Museums and Heritage

    Platts, H., Howard, D., Dalton, P. & Watkins, C., Jul 2020, UK Research and Innovation.

    Research output: Chapter in Book/Report/Conference proceedingOther contribution

  14. Published

    Topological susceptibility in lattice QCD with two flavors of dynamical quarks

    Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, 1 Dec 2001, In: Physical Review D . 6411, 11, p. - 10 p.

    Research output: Contribution to journalArticlepeer-review

  15. Published

    There are no R3 x S1 Gravitational Instantons

    Shanahan, H. & O'Murachadha, N., Mar 1993, In: Physical Review Letters. 70, 11, p. 1576 2 p.

    Research output: Contribution to journalArticlepeer-review

  16. Published

    The template RNAs of RNA polymerases can have compact secondary structure formed by long double helices with partial violation of the complementarities

    Solovyev, V., Zharkikh, A. A. & Kolchanov, N. A., 1984, In: FEBS Letters. 165, p. 72-78

    Research output: Contribution to journalArticlepeer-review

  17. Published

    The static quark potential in full QCD

    Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, Mar 1999, In: Nuclear Physics B - Proceedings Supplements. 73, p. 216-218 3 p.

    Research output: Contribution to journalArticlepeer-review

  18. Published

    The spread of awareness and its impact on epidemic outbreaks

    Funk, S., Gilad, E., Watkins, C. & Jansen, V. A. A., 21 Apr 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 16, p. 6872–6877 6 p.

    Research output: Contribution to journalArticlepeer-review

  19. Published

    The prediction of human exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames

    Solovyev, V. V., Salamov, A. A. & Lawrence, C. B., 1 Jan 1994, In: Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology. 2, p. 354-62 9 p.

    Research output: Contribution to journalArticlepeer-review

  20. Published

    THE PEDANT HUMAN GENOME DATABASE — FUNCTIONAL ANNOTATION OF THE HUMAN GENOME

    Schüller, C. M. E., Geier, B., Fritz, A., Salamov, A., Seledsov, I., Solovyev, V. & Frishman, D., 2 Jan 2002, In: TheScientificWorldJOURNAL. 2, p. 82-83 2 p.

    Research output: Contribution to journalArticlepeer-review

  21. Published

    The Isgur-Wise function from the lattice

    BOOTH, S. P., BOWLER, K. C., HAZEL, N. M., HENTY, D. S., HOEBER, H., KENWAY, R. D., RICHARDS, D. G., SHANAHAN, H. P., SIMONE, J. N., SIMPSON, A. D., LELLOUCH, L., NIEVES, J., SACHRAJDA, C. T. & WITTIG, H., 24 Jan 1994, In: Physical Review Letters. 72, 4, p. 462-465 4 p.

    Research output: Contribution to journalArticlepeer-review

  22. Published

    The identification of Transcription Factor Binding Sites using string kernels

    Shanahan, H., 10 Sep 2010.

    Research output: Contribution to conferenceOther

  23. Published

    The genome sequence of taurine cattle: a window to ruminant biology and evolution

    Elsik, C. G., Tellam, R. L., Worley, K. C., Gibbs, R. A., Muzny, D. M., Weinstock, G. M., Adelson, D. L., Eichler, E. E., Elnitski, L., Guigó, R., Hamernik, D. L., Kappes, S. M., Lewin, H. A., Lynn, D. J., Nicholas, F. W., Reymond, A., Rijnkels, M., Skow, L. C., Zdobnov, E. M., Schook, L. & 31 others, Womack, J., Alioto, T., Antonarakis, S. E., Astashyn, A., Chapple, C. E., Chen, H-C., Chrast, J., Câmara, F., Ermolaeva, O., Henrichsen, C. N., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Kokocinski, F., Landrum, M., Maglott, D., Pruitt, K., Sapojnikov, V., Searle, S. M., Solovyev, V., Souvorov, A., Ucla, C., Wyss, C., Anzola, J. M., Gerlach, D., Elhaik, E., Graur, D., Reese, J. T., Edgar, R. C. & Bovine Genome Sequencing and Analysis Consortium, 24 Apr 2009, In: Science. 324, 5926, p. 522-8 7 p.

    Research output: Contribution to journalArticlepeer-review

  24. Published

    The genome of the sea urchin Strongylocentrotus purpuratus

    Sodergren, E., Weinstock, G. M., Davidson, E. H., Cameron, R. A., Gibbs, R. A., Angerer, R. C., Angerer, L. M., Arnone, M. I., Burgess, D. R., Burke, R. D., Coffman, J. A., Dean, M., Elphick, M. R., Ettensohn, C. A., Foltz, K. R., Hamdoun, A., Hynes, R. O., Klein, W. H., Marzluff, W., McClay, D. R. & 31 others, Morris, R. L., Mushegian, A., Rast, J. P., Smith, L. C., Thorndyke, M. C., Vacquier, V. D., Wessel, G. M., Wray, G., Zhang, L., Elsik, C. G., Ermolaeva, O., Hlavina, W., Hofmann, G., Kitts, P., Landrum, M. J., Mackey, A. J., Maglott, D., Panopoulou, G., Poustka, A. J., Pruitt, K., Sapojnikov, V., Song, X., Souvorov, A., Solovyev, V., Wei, Z., Whittaker, C. A., Worley, K., Durbin, K. J., Shen, Y., Fedrigo, O. & Sea Urchin Genome Sequencing Consortium, 10 Nov 2006, In: Science. 314, 5801, p. 941-52 12 p.

    Research output: Contribution to journalArticlepeer-review

  25. Published

    The genome of the model beetle and pest Tribolium castaneum

    Richards, S., Gibbs, R. A., Weinstock, G. M., Brown, S. J., Denell, R., Beeman, R. W., Gibbs, R., Beeman, R. W., Brown, S. J., Bucher, G., Friedrich, M., Grimmelikhuijzen, C. J. P., Klingler, M., Lorenzen, M., Richards, S., Roth, S., Schröder, R., Tautz, D., Zdobnov, E. M., Muzny, D. & 31 others, Gibbs, R. A., Weinstock, G. M., Attaway, T., Bell, S., Buhay, C. J., Chandrabose, M. N., Chavez, D., Clerk-Blankenburg, K. P., Cree, A., Dao, M., Davis, C., Chacko, J., Dinh, H., Dugan-Rocha, S., Fowler, G., Garner, T. T., Garnes, J., Gnirke, A., Hawes, A., Hernandez, J., Hines, S., Holder, M., Hume, J., Jhangiani, S. N., Joshi, V., Khan, Z. M., Jackson, L., Kovar, C., Kowis, A., Solovyev, V. & Tribolium Genome Sequencing Consortium, 2008, In: Nature. 452, 7190, p. 949-55 7 p.

    Research output: Contribution to journalArticlepeer-review

  26. Published

    The Gene-Finder computer tools for analysis of human and model organisms genome sequences

    Solovyev, V. & Salamov, A., 1 Jan 1997, Proceedings of the Fifth International Conference on Intelligent Systems for Molecular Biology. Vol. 5. p. 294-302 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  27. Published

    The effect of mutation deletion and insertion of single amino acids on the three-dimensional structure of globins

    Kolchanov, N. A., Solovyev, V. & Zharkikh, A. A., 1983, In: FEBS Letters. 161, p. 65-70

    Research output: Contribution to journalArticlepeer-review

  28. Published

    The DNA sequence and biology of human chromosome 19

    Grimwood, J., Gordon, L. A., Olsen, A., Terry, A., Schmutz, J., Lamerdin, J., Hellsten, U., Goodstein, D., Couronne, O., Tran-Gyamfi, M., Aerts, A., Altherr, M., Ashworth, L., Bajorek, E., Black, S., Branscomb, E., Caenepeel, S., Carrano, A., Caoile, C., Chan, Y. M. & 78 others, Christensen, M., Cleland, C. A., Copeland, A., Dalin, E., Dehal, P., Denys, M., Detter, J. C., Escobar, J., Flowers, D., Fotopulos, D., Garcia, C., Georgescu, A. M., Glavina, T., Gomez, M., Gonzales, E., Groza, M., Hammon, N., Hawkins, T., Haydu, L., Ho, I., Huang, W., Israni, S., Jett, J., Kadner, K., Kimball, H., Kobayashi, A., Larionov, V., Leem, S-H., Lopez, F., Lou, Y., Lowry, S., Malfatti, S., Martinez, D., McCready, P., Medina, C., Morgan, J., Nelson, K., Nolan, M., Ovcharenko, I., Pitluck, S., Pollard, M., Popkie, A. P., Predki, P., Quan, G., Ramirez, L., Rash, S., Retterer, J., Rodriguez, A., Rogers, S., Salamov, A., Salazar, A., She, X., Smith, D., Slezak, T., Solovyev, V., Thayer, N., Tice, H., Tsai, M., Ustaszewska, A., Vo, N., Wagner, M., Wheeler, J., Wu, K., Xie, G., Yang, J., Dubchak, I., Furey, T. S., DeJong, P., Dickson, M., Gordon, D., Eichler, E. E., Pennacchio, L. A., Richardson, P., Stubbs, L., Rokhsar, D. S., Myers, R. M., Rubin, E. M. & Lucas, S. M., 1 Apr 2004, In: Nature. 428, 6982, p. 529-35 7 p.

    Research output: Contribution to journalArticlepeer-review

  29. Published

    The Corrected Gene Proximity map for analyzing the 3D genome organization using Hi-C data

    Ye, C., Paccanaro, A., Gerstein, M. & Yan, K-K., 29 May 2020, In: BMC Bioinformatics. 21, p. 1-18 18 p., 222.

    Research output: Contribution to journalArticlepeer-review

  30. Published

    The cluster of the point mutations predetermined by the quasipalindromic sequences of the nucleotide in the DNA

    Salganik, R. I., Dianov, G. L., Medvedev, O. A. & Solovyev, V., 1986, In: Proceedings of the USSR Academy of Science (Russ). 291, p. 1499-1502

    Research output: Contribution to journalArticlepeer-review

  31. Published

    The Chern-Simons number as an order parameter: classical sphaleron transitions for SU(2)-Higgs field theories for m(H)approximate to 120 GeV

    Shanahan, H. P. & Davis, A. C., 9 Jul 1998, In: Physics Letters B. 431, 1-2, p. 135-140 6 p.

    Research output: Contribution to journalArticlepeer-review

  32. Published

    The Channel Capacity of Evolution: Ultimate Limits on the Amount of Information Maintainable in the Genome

    Watkins, C., 2002, Proceedings of the Third International Conference on Bioinformatics of Genome Regulation and Structure. Novisibirsk, Russia, Vol. 2. p. 58--60 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  33. Published

    The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

    Bhat, P., Torres Bobadilla, M., Paccanaro, A., Yang, H. & Romero, A. E., 19 Nov 2019, In: Genome Biology. 20, p. 1-23 23 p., 244 (2019).

    Research output: Contribution to journalArticlepeer-review

  34. Published

    The application of Hadoop in structural bioinformatics

    Alnasir, J. & Shanahan, H., 20 Nov 2018, In: Briefings in Bioinformatics. p. 1-10 10 p., bby106.

    Research output: Contribution to journalArticlepeer-review

  35. Published

    Text classification using string kernels

    Lodhi, H., Saunders, C., Shawe-Taylor, J., Cristianini, N. & Watkins, C., 2002, In: Journal of Machine Learning Research. 2, p. 444 1 p.

    Research output: Contribution to journalArticlepeer-review

  36. Published

    Testing the Gauss linear assumption for on-line predictions

    Fedorova, V., Nouretdinov, I. & Gammerman, A., 2012, In: Progress in Artificial Intelligence. 1, 3, p. 205-213 9 p.

    Research output: Contribution to journalArticlepeer-review

  37. Published

    Testing Exchangeability On-line

    Vovk, V., Nouretdinov, I. & Gammerman, A., Feb 2003, (On-line Compression Modelling project).

    Research output: Working paper

  38. Published

    Testing exchangeability on-line

    Vovk, V., Nouretdinov, I. & Gammerman, A., 2003, Proceedings of the Twentieth International Conference on Machine Learning. Fawcett, T. & Mishra, N. (eds.). Menlo Park, CA: AAAI Press, p. 768-775

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  39. Submitted

    Teaching FAIR

    Shanahan, H., 4 May 2019, (Submitted) In: Data Intelligence.

    Research output: Contribution to journalArticlepeer-review

  40. Published

    Teaching Data Science and Cloud Computing in Low and Middle Income Countries

    Shanahan, H., Harrison, A. & May, S., 23 Nov 2015, In: Advanced Techniques in Biology & Medicine. 3, 3, p. 1-5 5 p., 1000150.

    Research output: Contribution to journalArticlepeer-review

  41. Published

    Systems Metagenomics: Profiling short-read microbiome data using population-based k-mer identification

    Shanahan, H. & Radwan, G., 6 Jul 2018.

    Research output: Contribution to conferencePosterpeer-review

  42. Published

    Systems Metagenomics

    Shanahan, H. & Radwan, G., 15 Jul 2018.

    Research output: Contribution to conferencePosterpeer-review

  43. Published

    SVM Venn Machine with k-Means Clustering

    Zhou, C., Nouretdinov, I., Luo, Z. & Gammerman, A., 2014, Artificial Intelligence Applications and Innovations: AIAI2014 Workshops. Rhodes, Greece, p. 251-260 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  44. Published

    Support Vector regression with ANOVA decomposition kernels

    Stitson, M., Gammerman, A., Vapnik, V., Vovk, V., Watkins, C. & Weston, J., 1999, Advances in Kernel Methods: Support Vector Learning. Scholkopf, B., Burghes, C. J. C. & Smola, A. J. (eds.). Cambridge, MA: MIT Press, p. 285-291 7 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  45. Published

    Support vector machines for multi-class pattern recognition

    Weston, J. & Watkins, C., 1999.

    Research output: Contribution to conferenceOtherpeer-review

  46. Published

    Support Vector density estimation

    Weston, J., Gammerman, A., Stitson, M., Vapnik, V., Vovk, V. & Watkins, C., 1999, Advances in Kernel Methods: Support Vector Learning. Scholkopf, B., Burghes, C. J. C. & Smola, A. J. (eds.). Cambridge, MA: MIT Press, p. 293-305 13 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  47. Published

    Subclonal mutation selection in mouse lymphomagenesis identifies known cancer loci and suggests novel candidates

    Webster, P., Dawes, J., Dewchand, H., Takacs, K., Iadarola, B., Bolt, B., Caceres Silva, J., Kaczor, J., Dharmalingam, G., Dore, M., Game, L., Adejumo, T., Elliott, J., Naresh, K., Karimi, M., Rekopoulou, K., Tan, G., Paccanaro, A. & Uren, A., 9 Jul 2018, In: Nature Communications. 9, p. 1-14 14 p., 2649.

    Research output: Contribution to journalArticlepeer-review

  48. Published

    Structuring Time Series Data to Gain Insight into Agent Behaviour

    Al-Baghdadi, N., Wisniewski, W., Lindsay, D., Lindsay, S., Kalnishkan, Y. & Watkins, C., 24 Feb 2020, Proceedings of the 3rd International Workshop on Big Data for Financial News and Data. IEEE, p. 5480-5490 11 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  49. Published

    Structure, Properties and Computer Identification of Eukaryotic genes

    Solovyev, V., 2002, Bioinformatics from Genomes to Drugs. V.1. Basic Technologies. Lengauer, T. (ed.). p. 59-111

    Research output: Chapter in Book/Report/Conference proceedingChapter

  50. Forthcoming

    Structural Pattern Discovery in Protein-Protein Interaction Networks

    Nepusz, T. & Paccanaro, A., 2012, (Accepted/In press) Handbook of Bio- and Neuroinformatics. Springer

    Research output: Chapter in Book/Report/Conference proceedingChapter

  51. Published

    Stoss — A stochastic simulation system for Bayesian belief networks

    Luo, Z. & Gammerman, A., 1991, Uncertainty in Knowledge Bases: Lecture Notes in Computer Science. Bouchon-Meunier, B., Yager, R. R. & Zadeh, L. A. (eds.). Springer, Vol. 521. p. 97-105

    Research output: Chapter in Book/Report/Conference proceedingChapter

  52. Published

    Statistical significance of ungapped sequence alignments.

    Alexandrov, N. N. & Solovyev, V. V., 1998, p. 463-472. 10 p.

    Research output: Contribution to conferenceAbstract

  53. Published

    Statistical approaches in Eukaryotic gene prediction

    Solovyev, V., 2007, Handbook of Statistical genetics. Balding, D., Canning, C. & Bishop, M. (eds.). 3rd ed. Wiley-Interscience

    Research output: Chapter in Book/Report/Conference proceedingChapter

  54. Published

    Statistical applications of algorithmic randomness

    Vovk, V. & Gammerman, A., 1999, Bulletin of the International Statistical Institute. Proceedings of the Fifty Second Session: Contributed Papers. book 3 ed. Vol. 58. p. 469-470 2 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  55. Published

    Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions

    Zhang, Z. D., Paccanaro, A., Fu, Y., Weissman, S., Weng, Z., Chang, J., Snyder, M. & Gerstein, M. B., 2007, In: Genome Research. 17, 6, p. 787-97 11 p.

    Research output: Contribution to journalArticlepeer-review

  56. Published

    SpliceDB: database of canonical and non-canonical mammalian splice sites

    Burset, M., Seledtsov, I. A. & Solovyev, V. V., 1 Jan 2001, In: Nucleic Acids Research. 29, 1, p. 255-259 5 p.

    Research output: Contribution to journalArticlepeer-review

  57. Published

    Spin effects in heavy hybrid mesons on an anisotropic lattice

    Drummond, I. T., Goodman, N. A., Horgan, R. R., Shanahan, H. P. & Storoni, L. C., 6 Apr 2000, In: Physics Letters B. 478, 1-3, p. 151-160 10 p.

    Research output: Contribution to journalArticlepeer-review

  58. Published

    Spectral clustering of protein sequences using sequence-profile scores

    Sasidharan, R., Gerstein, M. B. & Paccanaro, A., 2006, Proceedings of ICNPSC – 3rd International Conference on Neural Parallel and Scientific Computations.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  59. Published

    Spectral clustering of protein sequences

    Paccanaro, A., Casbon, J. A. & Saqi, M. A. S., 2006, In: Nucleic Acids Research. 34, 5, p. 1571-80 10 p.

    Research output: Contribution to journalArticlepeer-review

  60. Published

    Spectral clustering of protein sequences

    Paccanaro, A., Trifonov, V., Yu, H. & Gerstein, M. B., 2005, International Joint Conference on Neural Networks. p. 161-166

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  61. Published

    Special issue editorial - Kolmogorov complexity

    Gammerman, A. & Vovk, V., 1999, In: The Computer Journal. 42, 4, p. 251-251 1 p.

    Research output: Contribution to journalEditorialpeer-review

  62. Published

    Some Alternatives to Parikh Matrices Using String Kernels

    Clark, A. & Watkins, C., 2008, In: Fundamenta Informaticae. 84, 3-4, p. 291-303 13 p.

    Research output: Contribution to journalArticlepeer-review

  63. Published

    Somatic hyper mutagenesis in immunoglobulin genes. Correlation between somatic mutations and repeats. Somatic mutation properties and clonal selection

    Rogozin, I. B., Solovyev, V. & Kolchanov, N. A., 1991, In: Biochim. Biophys. Acta. 1089, p. 175-182

    Research output: Contribution to journalArticlepeer-review

  64. Published

    Social Technologies for Community Response to Epidemics

    Cole, J. & Watkins, C., Aug 2013, Tackling Antimicrobial Resistance - Identifying Future Research Themes: Proceedings of the Conference Tackling Antimicrobial Resistance, 6 February 2013. London: Royal United Services Institute, p. 65-73 9 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  65. Published

    Signal transduction networks during stress responses in Arabidopsis: high-throughput analysis and modelling

    Devoto, A. & Paccanaro, A., 2008, Plant Growth Signalling. Springer, p. 331-350 20 p. (Plant Cell Monogr).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  66. Published

    Serum Proteomic Abnormality Predating Screen Detection of Ovarian Cancer

    Gammerman, A., Vovk, V., Burford, B., Nouretdinov, I., Luo, Z., Chervonenkis, A., Waterfield, M., Cramer, R., Tempst, P., Villanueva, J., Kabir, M., Camuzeaux, S., Timms, J., Menon, U. & Jacobs, I., May 2009, In: The Computer Journal. 52, 3, p. 326-333 8 p.

    Research output: Contribution to journalArticlepeer-review

  67. Published

    Sequential decision problems and neural networks

    Barto, AG., Sutton, RS. & Watkins, C., 1990, p. 693.

    Research output: Contribution to conferenceOtherpeer-review

  68. Published

    Sequence alignment kernel for recognition of promoter regions

    Gordon, L., Chervonenkis, A. Y., Gammerman, A. J., Shahmuradov, I. A. & Solovyev, V. V., 12 Oct 2003, In: Bioinformatics. 19, 15, p. 1964-1971 8 p.

    Research output: Contribution to journalArticlepeer-review

  69. Published

    Selective Breeding Analysed as a Communication Channel: Channel Capacity as a Fundamental Limit on Adaptive Complexity

    Watkins, C., 2008, Symbolic and Numeric Algorithms for Scientific Computing : Proceedings of SYNASC'08. IEEE, p. 514--518 5 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  70. Published

    Sea quark effects on quarkonia

    Manke, T., Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A. & Yoshie, T., 1 Dec 2000, In: Physical Review D . 6211, 11, p. - 13 p.

    Research output: Contribution to journalArticlepeer-review

  71. Published

    SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale

    Nepusz, T., Sasidharan, R. & Paccanaro, A., 2010, In: BMC Bioinformatics. 11, p. 120

    Research output: Contribution to journalArticlepeer-review

  72. Published

    Safe Portfolio Optimization

    Watkins, C. & Macrae, R., 1999, Proc. IX Int. Symp. of Applied Stochastic Models and Data Analysis: Quantitative Methods in Business and Industry Society.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  73. Published

    Ridge Regression learning algorithm in dual variables

    Saunders, C., Gammerman, A. & Vovk, V., 1998, Proceedings of the Fifteenth International Conference on Machine Learning. San Francisco, CA: Morgan Kaufmann, p. 515-521 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  74. Published

    Reliable Probability Estimates Based on Support Vector Machines for Large Multiclass Datasets

    Lambrou, A., Papadopoulos, H., Nouretdinov, I. & Gammerman, A., Sep 2012, Artificial Intelligence Applications and Innovations - AIAI 2012 International Workshops: AIAB, AIeIA, CISE, COPA, IIVC, ISQL, MHDW, and WADTMB, Proceedings.. Halkidiki, Greece, Vol. II. p. 182-191 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  75. Published

    Reliable diagnosis of acute abdominal pain with conformal prediction

    Papadopoulos, H., Gammerman, A. & Vovk, V., 2009, In: International Journal of Engineering Intelligent Systems for Electrical Engineering and Communications. 17, 2-3, p. 127-137 11 p.

    Research output: Contribution to journalArticlepeer-review

  76. Published

    Rejoinder - Hedging predictions in machine learning

    Gammerman, A. & Vovk, V., Mar 2007, In: The Computer Journal. 50, 2, p. 173-177 5 p.

    Research output: Contribution to journalEditorialpeer-review

  77. Published

    Reinforcement Learning

    Watkins, C. & Dayan, P., 1 Dec 2002, Encyclopaedia of Cognitive Science. Nadel, L. (ed.). Wiley-Blackwell

    Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary

  78. Published
  79. Published

    Regulatory processes underscoring the light control of shoot meristem activity and leaf initiation

    Lopez Juez, E., Dillon, E., Magyar, Z., Khan, S., Hazeldine, S., Murray, J. A., Beemster, G. T., Bogre, L. & Shanahan, H., Jun 2009, p. S205-S205. 1 p.

    Research output: Contribution to conferenceAbstractpeer-review

  80. Published

    Recognition of 3' -processing sites of human mRNA precursors

    Salamov, A. A. & Solovyev, V. V., 1 Feb 1997, In: Bioinformatics. 13, 1, p. 23-28 6 p.

    Research output: Contribution to journalArticlepeer-review

  81. Published

    RDA COVID-19 Recommendations and Guidelines on Data Sharing

    Research Data Alliance COVID-19 Working Group, 30 Jun 2020, 144 p.

    Research output: Book/ReportBook

  82. Published

    Quenched QCD with O(a) improvement: The spectrum of light hadrons

    Bowler, K. C., Boyle, P., Garden, J., Kenway, R. D., Richards, D. G., Rowland, P. A., Ryan, S. M., Simma, H., Michael, C., Shanahan, H. P. & Wittig, H., 1 Sep 2000, In: Physical Review D . 6205, 5, p. - 19 p.

    Research output: Contribution to journalArticlepeer-review

  83. Published

    Quenched QCD with domain-wall fermions on coarse lattices

    Khan, A. A., Aoki, S., Aoki, Y., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Izubuchi, T., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Taniguchi, Y., Ukawa, A., Yoshie, T. & 1 others, CP-PACS Collaboration, Apr 2000, In: Nuclear Physics B - Proceedings Supplements. 83-4, p. 591-593 3 p.

    Research output: Contribution to journalArticlepeer-review

  84. Published

    Quenched light hadron spectrum with the Wilson quark action: Final results from CP-PACS

    Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, Mar 1999, In: Nuclear Physics B - Proceedings Supplements. 73, p. 189-191 3 p.

    Research output: Contribution to journalArticlepeer-review

  85. Published

    Quenched light hadron spectrum

    Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, 10 Jan 2000, In: Physical Review Letters. 84, 2, p. 238-241 4 p.

    Research output: Contribution to journalArticlepeer-review

  86. Published

    Quenched heavy-light decay constants

    BAXTER, R. M., BOOTH, S. P., BOWLER, K. C., COLLINS, S., HENTY, D. S., KENWAY, R. D., RICHARDS, D. G., SHANAHAN, H. P., SIMONE, J. N., SIMPSON, A. D., WILKES, B. E., EWING, A. K., LELLOUCH, L., SACHRAJDA, C. T. & WITTIG, H., 1 Feb 1994, In: Physical Review D . 49, 3, p. 1594-1605 12 p.

    Research output: Contribution to journalArticlepeer-review

  87. Published

    Quenched charmonium spectrum on anisotropic lattices

    Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K. I., Okamoto, M., Okawa, M., Shanahan, H. P., Taniguchi, Y., Ukawa, A., Yoshie, T. & CP-PACS collaboration, Mar 2001, In: Nuclear Physics B - Proceedings Supplements. 94, p. 325-328 4 p.

    Research output: Contribution to journalArticlepeer-review

  88. Published

    Quantifying environmental adaptation of metabolic pathways in metagenomics

    Gianoulis, T. A., Raes, J., Patel, P. V., Bjornson, R., Korbel, J. O., Letunic, I., Yamada, T., Paccanaro, A., Jensen, L. J., Snyder, M., Bork, P. & Gerstein, M. B., 3 Feb 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 5, p. 1374–1379 6 p.

    Research output: Contribution to journalArticlepeer-review

  89. Published

    Qualified predictions for large data sets in the case of pattern recognition

    Papadopoulos, H., Vovk, V. & Gammerman, A., 2002, Proceedings of the International Conference on Machine Learning and Applications. Wani, M., Arabnia, H., Cios, K., Hafeez, K. & Kendall, G. (eds.). CSREA Press, p. 159-163 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  90. Published

    Q-learning

    Watkins, C. J. C. H. & Dayan, P., 1992, In: Machine Learning. 8, 3, p. 279-292 14 p.

    Research output: Contribution to journalArticlepeer-review

  91. Published

    Protein secondary structure prediction using local alignments.

    Salamov, A. A. & Solovyev, V. V., 1997, p. 31-36. 6 p.

    Research output: Contribution to conferenceAbstract

  92. Published

    Properties and Prediction of Protein Secondary Structure

    Solovyev, V. & Shindyalov, I. N., 2002, Current Topics in Computational Biology. Jiang, T., Smith, T., Xu, Y. & Zhang, M. (eds.). MIT Press, p. 201–248

    Research output: Chapter in Book/Report/Conference proceedingChapter

  93. Published

    PromH: promoters identification using orthologous genomic sequences

    Solovyev, V. V. & Shahmuradov, I. A., 1 Jul 2003, In: Nucleic Acids Research. 31, 13, p. 3540-3545 6 p.

    Research output: Contribution to journalArticlepeer-review

  94. Published

    Privacy-Functionality Trade-off: A Privacy-Preserving Multi-Channel Smart Metering System

    Zhang, X., Kuenzel, S., Córdoba-Pachón, J-R. & Watkins, C., 21 Jun 2020, In: Energies. 13, 12, p. 1-30 30 p., 3221.

    Research output: Contribution to journalArticlepeer-review

  95. Published

    Preface to this Special Issue

    Gammerman, A. & Vovk, V., Sep 2015, In: Journal of Machine Learning Research. 16, p. 1677-1681 5 p.

    Research output: Contribution to journalEditorial

  96. Published

    Predictions controlees en apprentissage automatique

    Gammerman, A. & Vovk, V., 2010, In: La Revue Modulad. 42, p. 16-33 18 p.

    Research output: Contribution to journalArticle

  97. Published

    Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments.

    Salamov, A. A. & Solovyev, V. V., 1995, p. 11-15. 5 p.

    Research output: Contribution to conferenceAbstract

  98. Published

    Predicting the Frequencies of Drug Side effects

    Galeano, D., Li, S., Gerstein, M. & Paccanaro, A., 11 Sep 2020, In: Nature Communications. 11, p. 1-14 14 p., 4575.

    Research output: Contribution to journalArticlepeer-review

  99. Published

    Predicting internal exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames

    Solovyev, V. V., Salamov, A. A. & Lawrence, C. B., 11 Dec 1994, In: Nucleic Acids Research. 22, 24, p. 5156-63 8 p.

    Research output: Contribution to journalArticlepeer-review

  100. Published

    Predicting interactions in protein networks by completing defective cliques

    Yu, H., Paccanaro, A., Trifonov, V. & Gerstein, M., 2006, In: Bioinformatics. 22, 7, p. 823-9 7 p.

    Research output: Contribution to journalArticlepeer-review

Previous 1 2 3 Next