Bilateral NSF/BIO-BBSRC - Translational landscape to link cell growth with proliferation in the root meristem

Search results

• 2025

  ClusterONE Web: a tool for discovering and analyzing overlapping protein complexes

  Baez, M., Jimenez, R., Cernuzzi, L. & Paccanaro, A., 16 May 2025, In: Nucleic Acids Research. gkaf368.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Host centric drug repurposing for viral diseases

  de Siqueira Santos, S., Yang, H., Galeano, A. & Paccanaro, A., 2 Apr 2025, (E-pub ahead of print) In: PLoS Computational Biology. 21, 4, e1012876.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• 2024

  LanDis: the disease landscape explorer

  Caniza, H., Caceres, J. J., Torres, M. & Paccanaro, A., Apr 2024, In: European Journal of Human Genetics. 32, p. 461–465 5 p.

  Research output: Contribution to journal › Article › peer-review

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• 2022

  Heterogeneous data integration methods for patient similarity networks

  Gliozzo, J., Mesiti, M., Notaro, M., Petrini, A., Patak, A., Puertas-Gallardo, A., Paccanaro, A., Valentini, G. & Casiraghi, E., 13 Jun 2022, In: Briefings in Bioinformatics. 23, 4, bbac207.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Machine Learning Prediction of Side effects for Drugs in Clinical Trials

  Galeano , D. & Paccanaro, A., 19 Dec 2022, (E-pub ahead of print) In: Cell Reports Methods. 2, 12, 100358.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• 2021

  Machine learning and network medicine approaches for drug repositioning for COVID-19

  de Siquiera Santos, S., Torres, M., Galeano Galeano, D., Sanchez, M. D. M., Cernuzzi, L. & Paccanaro, A., 9 Nov 2021, (E-pub ahead of print) In: Cell Patterns.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Protein Function Prediction for newly sequenced organisms

  Torres, M., Yang, H., Romero, A. E. & Paccanaro, A., 9 Dec 2021, In: Nature Machine Intelligence.

  Research output: Contribution to journal › Article › peer-review

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• 2020

  E2FB Interacts with RETINOBLASTOMA RELATED and Regulates Cell Proliferation during Leaf Development

  Őszi, E., Papdi, C., Mohammed, B., Petkó-Szandtner, A., Leviczky, T., Molnár, E., Galvan-Ampudia, C., Safina, K., Lopez Juez, E., Horvath, B., Bogre, L. & Magyar, Z., 6 Jan 2020, In: Plant physiology. 182, 1, p. 518-533 16 p.

  Research output: Contribution to journal › Article › peer-review

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• ErbB-3 BINDING PROTEIN 1 Regulates Translation and Counteracts RETINOBLASTOMA RELATED to Maintain the Root Meristem

  Lokdarshi, A., Papdi, C., Pettkó-Szandtner, A., Dorokhov, S., Scheres, B., Magyar, Z., von Arnim, A. G., Bogre, L. & Horvath, B., 31 Jan 2020, (E-pub ahead of print) In: Plant physiology. 182, 2, p. 919-932 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Network modeling of patients’ biomolecular profiles for clinical phenotype/outcome prediction

  Gliozzo, J., Perlasca, P., Mesiti, M., Casiraghi, E., Vallacchi, V., Vergani, E., Frasca, M., Grossi, G., Petrini, A., Re, M., Paccanaro, A. & Valentini, G., 27 Feb 2020, In: Scientific Reports. 10, p. 1-15 15 p., 3612.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Predicting the Frequencies of Drug Side effects

  Galeano , D., Li, S., Gerstein, M. & Paccanaro, A., 11 Sept 2020, In: Nature Communications. 11, p. 1-14 14 p., 4575.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• The Corrected Gene Proximity map for analyzing the 3D genome organization using Hi-C data

  Ye, C., Paccanaro, A., Gerstein, M. & Yan, K.-K., 29 May 2020, In: BMC Bioinformatics. 21, p. 1-18 18 p., 222.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• 2019

  Disease gene prediction for molecularly uncharacterized diseases

  Caceres , J. & Paccanaro, A., 5 Jul 2019, In: PLoS Computational Biology. 15, 7, p. 1-14 14 p., e1007078.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• E2FA and E2FB transcription factors coordinate cell proliferation with seed maturation

  Leviczky, T., Molnar, E., Papdi, C., Oszi, E., Horvath, G. V., Vizler, C., Nagy, V., Pauk, J., Bogre, L. & Magyar, Z., 26 Nov 2019, (E-pub ahead of print) In: Development (Cambridge, England). 146, 22, p. 1-16 16 p., DEVELOP/2019/179333.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• The MKK7-MPK6 MAP Kinase Module Is a Regulator of Meristem Quiescence or Active Growth in Arabidopsis

  Dóczi, R., Hatzimasoura, E., Farahi Bilooei, S., Ahmad, Z., Ditengou, F. A., Lopez Juez, E., Palme, K. & Bogre, L., 5 Mar 2019, In: Frontiers in Plant Science. 10, p. 1-11 11 p., 202.

  Research output: Contribution to journal › Article › peer-review

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• γ-Tubulin interacts with E2FA, E2FB and E2FC transcription factors, regulates proliferation and endocycle in Arabidopsis

  Kállai, B. M., Kourová, H., Chumová, J., Papdi, C., Trögelová, L., Kofroňová, O., Hozák, P., Filimonenko, V., Mészáros , T., Magyar , Z., Bogre, L. & Binarová, P., 6 Nov 2019, In: Journal of Experimental Botany. erz498.

  Research output: Contribution to journal › Article › peer-review

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  4 Downloads (Pure)

• 2018

  Converging Light, Energy and Hormonal Signaling Control Meristem Activity, Leaf Initiation, and Growth

  Mohammed, B., Farahi Bilooei, S., Dóczi, R., Grove, E., Railo, S., Palme, K., Ditengou, F. A., Bogre, L. & Lopez-Juez, E., 6 Feb 2018, (E-pub ahead of print) In: Plant physiology. 176, 2, p. 1365-1381 17 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  46 Downloads (Pure)

• 2017

  Arabidopsis RETINOBLASTOMA RELATED directly regulates DNA damage responses through functions beyond cell cycle control

  Horvath, B., Kourova, H., Nagy, S., Nemeth, E., Magyar, Z., Papdi, C., Ahmad, Z., Sanchez-Perez, G. F., Perilli, S., Blilou, I., Pettkó-Szandtner, A., Darula, Z., Meszaros, T., Binarova, P., Bogre, L. & Scheres, B., 2 May 2017, In: EMBO Journal . 36, 9, p. 1261-1278 18 p.

  Research output: Contribution to journal › Article › peer-review

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• 2016

  mutation3D: Cancer Gene Prediction Through Atomic Clustering of Coding Variants in the Structural Proteome

  Meyer, M. J., Lapcevic, R., Romero, A. E., Yoon, M., Das, J., Beltrán, J. F., Mort, M., Stenson, P. D., Cooper, D. N., Paccanaro, A. & Yu, H., May 2016, In: Human Mutation. 37, 5, p. 447-456 10 p.

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