Professor Hugh Shanahan

  1. 2020
  2. Published

    “Ethics When You Least Expect It”: A Modular Approach to Short Course Data Ethics Instruction

    Bezuidenhout, L., Quick, R. & Shanahan, H., 17 Feb 2020, In : Science and Engineering Ethics. p. 1-25 25 p.

    Research output: Contribution to journalArticle

  3. 2019
  4. Submitted

    Teaching FAIR

    Shanahan, H., 4 May 2019, (Submitted) In : Data Intelligence.

    Research output: Contribution to journalArticle

  5. Submitted

    9 Simple recommendations for teaching data skills

    Shanahan, H., 16 Apr 2019, (Submitted) In : Data Science Journal.

    Research output: Contribution to journalArticle

  6. Submitted

    Embedding Open Science practice into Data Science Training

    Shanahan, H., 1 Jan 2019, (Submitted).

    Research output: Contribution to conferencePoster

  7. 2018
  8. Published

    Transcriptomics: Quantifying Non-Uniform Read Distribution Using MapReduce

    Alnasir, J. & Shanahan, H., 27 Dec 2018, In : International Journal for the Foundations of Computer Science. 29, 8, 20 p.

    Research output: Contribution to journalArticle

  9. Published

    The application of Hadoop in structural bioinformatics

    Alnasir, J. & Shanahan, H., 20 Nov 2018, In : Briefings in Bioinformatics. p. 1-10 10 p., bby106.

    Research output: Contribution to journalArticle

  10. E-pub ahead of print

    Systems Metagenomics: Applying Systems Biology Thinking to Human Microbiome Analysis

    Radwan, G. S. & Shanahan, H., 24 Aug 2018, Computational Methods in Systems Biology - 16th International Conference, CMSB 2018, Proceedings. Springer-Verlag, Vol. 11095 LNBI. p. 318-321 4 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11095 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  11. Published

    Systems Metagenomics

    Shanahan, H. & Radwan, G., 15 Jul 2018.

    Research output: Contribution to conferencePoster

  12. Published
  13. Submitted

    “Ethics When You Least Expect It”: A Modular Approach to Data Ethics Instruction

    Shanahan, H., Bezuidenhout, L. & Quick, R., 2018, (Submitted).

    Research output: Contribution to conferencePaper

  14. 2017
  15. Published

    Biological Big Bytes: Integrative Analysis of Large Biological Datasets

    Shanahan, H., Chen, M., Harrison, A. & Orlov, Y., 13 Sep 2017, In : Journal of Integrative Bioinformatics. 14, 3, 2 p.

    Research output: Contribution to journalEditorial

  16. Published

    A Novel Method to Detect Bias in Short Read NGS Data

    Alnasir, J. & Shanahan, H., 2017, In : Journal of Integrative Bioinformatics. 14, 3, p. 1-9 9 p.

    Research output: Contribution to journalArticle

  17. 2016
  18. Published
  19. Published
  20. 2015
  21. Published

    Investigation into the annotation of protocol sequencing steps in the sequence read archive

    AlNasir, J. & Shanahan, H., 1 Dec 2015, In : GigaScience. 4, 1, p. 1-11 11 p.

    Research output: Contribution to journalArticle

  22. Published

    Teaching Data Science and Cloud Computing in Low and Middle Income Countries

    Shanahan, H., Harrison, A. & May, S., 23 Nov 2015, In : Advanced Techniques in Biology & Medicine. 3, 3, p. 1-5 5 p., 1000150.

    Research output: Contribution to journalArticle

  23. Published
  24. Published
  25. In preparation

    PDB-Hadoop: Parallelising Legacy applications on the Protein Databank using Apache Hadoop

    AlNasir, J. & Shanahan, H., 2015, (In preparation) In : Bioinformatics.

    Research output: Contribution to journalArticle

  26. 2014
  27. Published

    Bioinformatics on the cloud computing platform Azure

    Shanahan, H., Harrison, A. & Owen, A. M., 22 Jul 2014, In : PLoS ONE. 9, 7, p. e102642

    Research output: Contribution to journalArticle

  28. 2013
  29. E-pub ahead of print

    Dissecting the chromatin interactome of microRNA genes

    Chen, D., Fu, L-Y., Zhang, Z., Yu, G., Zhang, H., Jiang, L., Harrison, A., Shanahan, H., Klukas, C., Zhang, H-Y., Ruan, Y., Chen, LI-LI. & Chen, M., 20 Dec 2013, In : Nucleic Acids Research.

    Research output: Contribution to journalArticle

  30. Published

    Jasmonate controls leaf growth by repressing cell proliferation and the onset of endoreduplication while maintaining a potential stand-by mode

    Noir, S., Bömer, M., Takahashi, N., Ishida, T., Tsui, T-L., Balbi, V., Shanahan, H., Sugimoto, K. & Devoto, A., Apr 2013, In : Plant physiology. 161, 4, p. 1930-1951

    Research output: Contribution to journalArticle

  31. Forthcoming

    An Overview of Gene Regulation

    Shanahan, H. & Harrison, A., 2013, (Accepted/In press) Approaches to Integrative Bioinformatics. Chen, MI. & Hofstaedt, R. (eds.). Springer, p. 21-69

    Research output: Chapter in Book/Report/Conference proceedingChapter

  32. 2012
  33. Published

    Normalized Affymetrix expression data are biased by G-quadruplex formation

    Shanahan, H. P., Memon, F. N., Upton, G. J. G. & Harrison, A. P., 1 Apr 2012, In : Nucleic Acids Research. 40, 8, p. 3307-3315 9 p.

    Research output: Contribution to journalArticle

  34. In preparation

    modCDF - modifying CDF's for microarrays using sequence similarity

    Shanahan, H., Harrison, A., Upton, G. & Memon, F., 2012, (In preparation) In : Bioinformatics. 2 p.

    Research output: Contribution to journalArticle

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