A large-scale evaluation of computational protein function prediction. / Radivojac, Predrag; Clark, Wyatt T; Oron, Tal Ronnen; Schnoes, Alexandra M; Wittkop, Tobias; Sokolov, Artem; Graim, Kiley; Funk, Christopher; Verspoor, Karin; Ben-Hur, Asa; Pandey, Gaurav; Yunes, Jeffrey M; Talwalkar, Ameet S; Repo, Susanna; Souza, Michael L; Piovesan, Damiano; Casadio, Rita; Wang, Zheng; Cheng, Jianlin; Fang, Hai; Gough, Julian; Koskinen, Patrik; Törönen, Petri; Nokso-Koivisto, Jussi; Holm, Liisa; Cozzetto, Domenico; Buchan, Daniel W A; Bryson, Kevin; Jones, David T; Limaye, Bhakti; Inamdar, Harshal; Datta, Avik; Manjari, Sunitha K; Joshi, Rajendra; Chitale, Meghana; Kihara, Daisuke; Lisewski, Andreas M; Erdin, Serkan; Venner, Eric; Lichtarge, Olivier; Rentzsch, Robert; Yang, Haixuan; Romero, Alfonso E; Bhat, Prajwal; Paccanaro, Alberto; Hamp, Tobias; Kaßner, Rebecca; Seemayer, Stefan; Vicedo, Esmeralda; Schaefer, Christian; Achten, Dominik; Auer, Florian; Boehm, Ariane; Braun, Tatjana; Hecht, Maximilian; Heron, Mark; Hönigschmid, Peter; Hopf, Thomas A; Kaufmann, Stefanie; Kiening, Michael; Krompass, Denis; Landerer, Cedric; Mahlich, Yannick; Roos, Manfred; Björne, Jari; Salakoski, Tapio; Wong, Andrew; Shatkay, Hagit; Gatzmann, Fanny; Sommer, Ingolf; Wass, Mark N; Sternberg, Michael J E; Škunca, Nives; Supek, Fran; Bošnjak, Matko; Panov, Panče; Džeroski, Sašo; Šmuc, Tomislav; Kourmpetis, Yiannis A I; van Dijk, Aalt D J; ter Braak, Cajo J F; Zhou, Yuanpeng; Gong, Qingtian; Dong, Xinran; Tian, Weidong; Falda, Marco; Fontana, Paolo; Lavezzo, Enrico; Di Camillo, Barbara; Toppo, Stefano; Lan, Liang; Djuric, Nemanja; Guo, Yuhong; Vucetic, Slobodan; Bairoch, Amos; Linial, Michal; Babbitt, Patricia C; Brenner, Steven E; Orengo, Christine; Rost, Burkhard; Mooney, Sean D; Friedberg, Iddo.

In: Nature Methods, Vol. 10, No. 3, 03.2013, p. 221-7.

Research output: Contribution to journalArticlepeer-review

Published

Standard

A large-scale evaluation of computational protein function prediction. / Radivojac, Predrag; Clark, Wyatt T; Oron, Tal Ronnen; Schnoes, Alexandra M; Wittkop, Tobias; Sokolov, Artem; Graim, Kiley; Funk, Christopher; Verspoor, Karin; Ben-Hur, Asa; Pandey, Gaurav; Yunes, Jeffrey M; Talwalkar, Ameet S; Repo, Susanna; Souza, Michael L; Piovesan, Damiano; Casadio, Rita; Wang, Zheng; Cheng, Jianlin; Fang, Hai; Gough, Julian; Koskinen, Patrik; Törönen, Petri; Nokso-Koivisto, Jussi; Holm, Liisa; Cozzetto, Domenico; Buchan, Daniel W A; Bryson, Kevin; Jones, David T; Limaye, Bhakti; Inamdar, Harshal; Datta, Avik; Manjari, Sunitha K; Joshi, Rajendra; Chitale, Meghana; Kihara, Daisuke; Lisewski, Andreas M; Erdin, Serkan; Venner, Eric; Lichtarge, Olivier; Rentzsch, Robert; Yang, Haixuan; Romero, Alfonso E; Bhat, Prajwal; Paccanaro, Alberto; Hamp, Tobias; Kaßner, Rebecca; Seemayer, Stefan; Vicedo, Esmeralda; Schaefer, Christian; Achten, Dominik; Auer, Florian; Boehm, Ariane; Braun, Tatjana; Hecht, Maximilian; Heron, Mark; Hönigschmid, Peter; Hopf, Thomas A; Kaufmann, Stefanie; Kiening, Michael; Krompass, Denis; Landerer, Cedric; Mahlich, Yannick; Roos, Manfred; Björne, Jari; Salakoski, Tapio; Wong, Andrew; Shatkay, Hagit; Gatzmann, Fanny; Sommer, Ingolf; Wass, Mark N; Sternberg, Michael J E; Škunca, Nives; Supek, Fran; Bošnjak, Matko; Panov, Panče; Džeroski, Sašo; Šmuc, Tomislav; Kourmpetis, Yiannis A I; van Dijk, Aalt D J; ter Braak, Cajo J F; Zhou, Yuanpeng; Gong, Qingtian; Dong, Xinran; Tian, Weidong; Falda, Marco; Fontana, Paolo; Lavezzo, Enrico; Di Camillo, Barbara; Toppo, Stefano; Lan, Liang; Djuric, Nemanja; Guo, Yuhong; Vucetic, Slobodan; Bairoch, Amos; Linial, Michal; Babbitt, Patricia C; Brenner, Steven E; Orengo, Christine; Rost, Burkhard; Mooney, Sean D; Friedberg, Iddo.

In: Nature Methods, Vol. 10, No. 3, 03.2013, p. 221-7.

Research output: Contribution to journalArticlepeer-review

Harvard

Radivojac, P, Clark, WT, Oron, TR, Schnoes, AM, Wittkop, T, Sokolov, A, Graim, K, Funk, C, Verspoor, K, Ben-Hur, A, Pandey, G, Yunes, JM, Talwalkar, AS, Repo, S, Souza, ML, Piovesan, D, Casadio, R, Wang, Z, Cheng, J, Fang, H, Gough, J, Koskinen, P, Törönen, P, Nokso-Koivisto, J, Holm, L, Cozzetto, D, Buchan, DWA, Bryson, K, Jones, DT, Limaye, B, Inamdar, H, Datta, A, Manjari, SK, Joshi, R, Chitale, M, Kihara, D, Lisewski, AM, Erdin, S, Venner, E, Lichtarge, O, Rentzsch, R, Yang, H, Romero, AE, Bhat, P, Paccanaro, A, Hamp, T, Kaßner, R, Seemayer, S, Vicedo, E, Schaefer, C, Achten, D, Auer, F, Boehm, A, Braun, T, Hecht, M, Heron, M, Hönigschmid, P, Hopf, TA, Kaufmann, S, Kiening, M, Krompass, D, Landerer, C, Mahlich, Y, Roos, M, Björne, J, Salakoski, T, Wong, A, Shatkay, H, Gatzmann, F, Sommer, I, Wass, MN, Sternberg, MJE, Škunca, N, Supek, F, Bošnjak, M, Panov, P, Džeroski, S, Šmuc, T, Kourmpetis, YAI, van Dijk, ADJ, ter Braak, CJF, Zhou, Y, Gong, Q, Dong, X, Tian, W, Falda, M, Fontana, P, Lavezzo, E, Di Camillo, B, Toppo, S, Lan, L, Djuric, N, Guo, Y, Vucetic, S, Bairoch, A, Linial, M, Babbitt, PC, Brenner, SE, Orengo, C, Rost, B, Mooney, SD & Friedberg, I 2013, 'A large-scale evaluation of computational protein function prediction', Nature Methods, vol. 10, no. 3, pp. 221-7. https://doi.org/10.1038/nmeth.2340

APA

Radivojac, P., Clark, W. T., Oron, T. R., Schnoes, A. M., Wittkop, T., Sokolov, A., Graim, K., Funk, C., Verspoor, K., Ben-Hur, A., Pandey, G., Yunes, J. M., Talwalkar, A. S., Repo, S., Souza, M. L., Piovesan, D., Casadio, R., Wang, Z., Cheng, J., ... Friedberg, I. (2013). A large-scale evaluation of computational protein function prediction. Nature Methods, 10(3), 221-7. https://doi.org/10.1038/nmeth.2340

Vancouver

Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A et al. A large-scale evaluation of computational protein function prediction. Nature Methods. 2013 Mar;10(3):221-7. https://doi.org/10.1038/nmeth.2340

Author

Radivojac, Predrag ; Clark, Wyatt T ; Oron, Tal Ronnen ; Schnoes, Alexandra M ; Wittkop, Tobias ; Sokolov, Artem ; Graim, Kiley ; Funk, Christopher ; Verspoor, Karin ; Ben-Hur, Asa ; Pandey, Gaurav ; Yunes, Jeffrey M ; Talwalkar, Ameet S ; Repo, Susanna ; Souza, Michael L ; Piovesan, Damiano ; Casadio, Rita ; Wang, Zheng ; Cheng, Jianlin ; Fang, Hai ; Gough, Julian ; Koskinen, Patrik ; Törönen, Petri ; Nokso-Koivisto, Jussi ; Holm, Liisa ; Cozzetto, Domenico ; Buchan, Daniel W A ; Bryson, Kevin ; Jones, David T ; Limaye, Bhakti ; Inamdar, Harshal ; Datta, Avik ; Manjari, Sunitha K ; Joshi, Rajendra ; Chitale, Meghana ; Kihara, Daisuke ; Lisewski, Andreas M ; Erdin, Serkan ; Venner, Eric ; Lichtarge, Olivier ; Rentzsch, Robert ; Yang, Haixuan ; Romero, Alfonso E ; Bhat, Prajwal ; Paccanaro, Alberto ; Hamp, Tobias ; Kaßner, Rebecca ; Seemayer, Stefan ; Vicedo, Esmeralda ; Schaefer, Christian ; Achten, Dominik ; Auer, Florian ; Boehm, Ariane ; Braun, Tatjana ; Hecht, Maximilian ; Heron, Mark ; Hönigschmid, Peter ; Hopf, Thomas A ; Kaufmann, Stefanie ; Kiening, Michael ; Krompass, Denis ; Landerer, Cedric ; Mahlich, Yannick ; Roos, Manfred ; Björne, Jari ; Salakoski, Tapio ; Wong, Andrew ; Shatkay, Hagit ; Gatzmann, Fanny ; Sommer, Ingolf ; Wass, Mark N ; Sternberg, Michael J E ; Škunca, Nives ; Supek, Fran ; Bošnjak, Matko ; Panov, Panče ; Džeroski, Sašo ; Šmuc, Tomislav ; Kourmpetis, Yiannis A I ; van Dijk, Aalt D J ; ter Braak, Cajo J F ; Zhou, Yuanpeng ; Gong, Qingtian ; Dong, Xinran ; Tian, Weidong ; Falda, Marco ; Fontana, Paolo ; Lavezzo, Enrico ; Di Camillo, Barbara ; Toppo, Stefano ; Lan, Liang ; Djuric, Nemanja ; Guo, Yuhong ; Vucetic, Slobodan ; Bairoch, Amos ; Linial, Michal ; Babbitt, Patricia C ; Brenner, Steven E ; Orengo, Christine ; Rost, Burkhard ; Mooney, Sean D ; Friedberg, Iddo. / A large-scale evaluation of computational protein function prediction. In: Nature Methods. 2013 ; Vol. 10, No. 3. pp. 221-7.

BibTeX

@article{2f56efba9370414082caf992245ec46f,
title = "A large-scale evaluation of computational protein function prediction",
keywords = "Algorithms, Animals, Computational Biology, Databases, Protein, Exoribonucleases, Forecasting, Humans, Molecular Biology, Molecular Sequence Annotation, Proteins, Species Specificity",
author = "Predrag Radivojac and Clark, {Wyatt T} and Oron, {Tal Ronnen} and Schnoes, {Alexandra M} and Tobias Wittkop and Artem Sokolov and Kiley Graim and Christopher Funk and Karin Verspoor and Asa Ben-Hur and Gaurav Pandey and Yunes, {Jeffrey M} and Talwalkar, {Ameet S} and Susanna Repo and Souza, {Michael L} and Damiano Piovesan and Rita Casadio and Zheng Wang and Jianlin Cheng and Hai Fang and Julian Gough and Patrik Koskinen and Petri T{\"o}r{\"o}nen and Jussi Nokso-Koivisto and Liisa Holm and Domenico Cozzetto and Buchan, {Daniel W A} and Kevin Bryson and Jones, {David T} and Bhakti Limaye and Harshal Inamdar and Avik Datta and Manjari, {Sunitha K} and Rajendra Joshi and Meghana Chitale and Daisuke Kihara and Lisewski, {Andreas M} and Serkan Erdin and Eric Venner and Olivier Lichtarge and Robert Rentzsch and Haixuan Yang and Romero, {Alfonso E} and Prajwal Bhat and Alberto Paccanaro and Tobias Hamp and Rebecca Ka{\ss}ner and Stefan Seemayer and Esmeralda Vicedo and Christian Schaefer and Dominik Achten and Florian Auer and Ariane Boehm and Tatjana Braun and Maximilian Hecht and Mark Heron and Peter H{\"o}nigschmid and Hopf, {Thomas A} and Stefanie Kaufmann and Michael Kiening and Denis Krompass and Cedric Landerer and Yannick Mahlich and Manfred Roos and Jari Bj{\"o}rne and Tapio Salakoski and Andrew Wong and Hagit Shatkay and Fanny Gatzmann and Ingolf Sommer and Wass, {Mark N} and Sternberg, {Michael J E} and Nives {\v S}kunca and Fran Supek and Matko Bo{\v s}njak and Pan{\v c}e Panov and Sa{\v s}o D{\v z}eroski and Tomislav {\v S}muc and Kourmpetis, {Yiannis A I} and {van Dijk}, {Aalt D J} and {ter Braak}, {Cajo J F} and Yuanpeng Zhou and Qingtian Gong and Xinran Dong and Weidong Tian and Marco Falda and Paolo Fontana and Enrico Lavezzo and {Di Camillo}, Barbara and Stefano Toppo and Liang Lan and Nemanja Djuric and Yuhong Guo and Slobodan Vucetic and Amos Bairoch and Michal Linial and Babbitt, {Patricia C} and Brenner, {Steven E} and Christine Orengo and Burkhard Rost and Mooney, {Sean D} and Iddo Friedberg",
year = "2013",
month = mar,
doi = "10.1038/nmeth.2340",
language = "English",
volume = "10",
pages = "221--7",
journal = "Nature Methods",
issn = "1548-7091",
publisher = "Nature Publishing Group",
number = "3",

}

RIS

TY - JOUR

T1 - A large-scale evaluation of computational protein function prediction

AU - Radivojac, Predrag

AU - Clark, Wyatt T

AU - Oron, Tal Ronnen

AU - Schnoes, Alexandra M

AU - Wittkop, Tobias

AU - Sokolov, Artem

AU - Graim, Kiley

AU - Funk, Christopher

AU - Verspoor, Karin

AU - Ben-Hur, Asa

AU - Pandey, Gaurav

AU - Yunes, Jeffrey M

AU - Talwalkar, Ameet S

AU - Repo, Susanna

AU - Souza, Michael L

AU - Piovesan, Damiano

AU - Casadio, Rita

AU - Wang, Zheng

AU - Cheng, Jianlin

AU - Fang, Hai

AU - Gough, Julian

AU - Koskinen, Patrik

AU - Törönen, Petri

AU - Nokso-Koivisto, Jussi

AU - Holm, Liisa

AU - Cozzetto, Domenico

AU - Buchan, Daniel W A

AU - Bryson, Kevin

AU - Jones, David T

AU - Limaye, Bhakti

AU - Inamdar, Harshal

AU - Datta, Avik

AU - Manjari, Sunitha K

AU - Joshi, Rajendra

AU - Chitale, Meghana

AU - Kihara, Daisuke

AU - Lisewski, Andreas M

AU - Erdin, Serkan

AU - Venner, Eric

AU - Lichtarge, Olivier

AU - Rentzsch, Robert

AU - Yang, Haixuan

AU - Romero, Alfonso E

AU - Bhat, Prajwal

AU - Paccanaro, Alberto

AU - Hamp, Tobias

AU - Kaßner, Rebecca

AU - Seemayer, Stefan

AU - Vicedo, Esmeralda

AU - Schaefer, Christian

AU - Achten, Dominik

AU - Auer, Florian

AU - Boehm, Ariane

AU - Braun, Tatjana

AU - Hecht, Maximilian

AU - Heron, Mark

AU - Hönigschmid, Peter

AU - Hopf, Thomas A

AU - Kaufmann, Stefanie

AU - Kiening, Michael

AU - Krompass, Denis

AU - Landerer, Cedric

AU - Mahlich, Yannick

AU - Roos, Manfred

AU - Björne, Jari

AU - Salakoski, Tapio

AU - Wong, Andrew

AU - Shatkay, Hagit

AU - Gatzmann, Fanny

AU - Sommer, Ingolf

AU - Wass, Mark N

AU - Sternberg, Michael J E

AU - Škunca, Nives

AU - Supek, Fran

AU - Bošnjak, Matko

AU - Panov, Panče

AU - Džeroski, Sašo

AU - Šmuc, Tomislav

AU - Kourmpetis, Yiannis A I

AU - van Dijk, Aalt D J

AU - ter Braak, Cajo J F

AU - Zhou, Yuanpeng

AU - Gong, Qingtian

AU - Dong, Xinran

AU - Tian, Weidong

AU - Falda, Marco

AU - Fontana, Paolo

AU - Lavezzo, Enrico

AU - Di Camillo, Barbara

AU - Toppo, Stefano

AU - Lan, Liang

AU - Djuric, Nemanja

AU - Guo, Yuhong

AU - Vucetic, Slobodan

AU - Bairoch, Amos

AU - Linial, Michal

AU - Babbitt, Patricia C

AU - Brenner, Steven E

AU - Orengo, Christine

AU - Rost, Burkhard

AU - Mooney, Sean D

AU - Friedberg, Iddo

PY - 2013/3

Y1 - 2013/3

KW - Algorithms

KW - Animals

KW - Computational Biology

KW - Databases, Protein

KW - Exoribonucleases

KW - Forecasting

KW - Humans

KW - Molecular Biology

KW - Molecular Sequence Annotation

KW - Proteins

KW - Species Specificity

U2 - 10.1038/nmeth.2340

DO - 10.1038/nmeth.2340

M3 - Article

C2 - 23353650

VL - 10

SP - 221

EP - 227

JO - Nature Methods

JF - Nature Methods

SN - 1548-7091

IS - 3

ER -