Dr Jamie Alnasir

1 - 19 out of 19Page size: 100
RSS feed of this list
Sort by: Type
  1. Software › Research
  2. Published

    Artemis -- Python library for reading/writing PDB files and computing dihedral angles

    Alnasir, J., 1 Nov 2014

    Research output: Non-textual form › Software

  3. Published

    Choose-Survey

    Alnasir, J., Anderberg, D., Chevalier, A., Luhrmann, M. & Pavan, R., 1 Sep 2015

    Research output: Non-textual form › Software

  4. Published

    PDB structural analysis service

    Alnasir, J., 1 Nov 2013

    Research output: Non-textual form › Software

  5. Published

    Push notifications for the Choose-Survey project

    Alnasir, J. & Luhrmann, M., 1 Sep 2016

    Research output: Non-textual form › Software

  6. Published

    Zeus desktop molecular visualisation software: Molecular viewer for WIndows

    Alnasir, J., 1 Jul 2010

    Research output: Non-textual form › Software

  7. Doctoral Thesis › Research
  8. Unpublished

    The Analysis of High-Throughput Biological Datasets Utilising Distributed Computing

    Alnasir, J., 2018, (Unpublished) 259 p.

    Research output: Thesis › Doctoral Thesis

  9. Article › Research › Peer-reviewed
  10. Published

    A Novel Method to Detect Bias in Short Read NGS Data

    Alnasir, J. & Shanahan, H., 2017, In: Journal of Integrative Bioinformatics. 14, 3, p. 1-9 9 p.

    Research output: Contribution to journal › Article › peer-review

  11. Published

    Cyclisation of Cell-Penetrating PDZ-Binding Peptides Directed to PSD95

    Dabhi, S., Duberly, K., Alnasir, J., Wijesiriwardana, N. & Austen, B., 2019, In: American Research Journal of Chemistry. 3, 1, p. 1-11 11 p.

    Research output: Contribution to journal › Article › peer-review

  12. Published

    Investigation into the annotation of protocol sequencing steps in the sequence read archive

    Alnasir, J. & Shanahan, H., Dec 2015, In: GigaScience. 4, 1, p. 1-11 11 p.

    Research output: Contribution to journal › Article › peer-review

  13. In preparation

    PDB-Hadoop: Parallelising Legacy applications on the Protein Databank using Apache Hadoop

    AlNasir, J. & Shanahan, H., 2015, (In preparation) In: Bioinformatics.

    Research output: Contribution to journal › Article › peer-review

  14. Published

    The application of Hadoop in structural bioinformatics

    Alnasir, J. & Shanahan, H., 20 Nov 2018, In: Briefings in Bioinformatics. p. 1-10 10 p., bby106.

    Research output: Contribution to journal › Article › peer-review

  15. Published

    Transcriptomics: Quantifying Non-Uniform Read Distribution Using MapReduce

    Alnasir, J. & Shanahan, H., 27 Dec 2018, In: International Journal for the Foundations of Computer Science. 29, 8, 20 p.

    Research output: Contribution to journal › Article › peer-review

  16. Poster › Research › Peer-reviewed
  17. Published

    Characterisation of cyclic neuroprotective PDZ binding ligands

    AlNasir, J. & Austen, B., 8 Feb 2011.

    Research output: Contribution to conference › Poster › peer-review

  18. Published

    PDB-Hadoop: Parallelising user applications on the protein databank using Apache Hadoop

    AlNasir, J. & Shanahan, H., Jul 2015.

    Research output: Contribution to conference › Poster › peer-review

  19. Abstract › Research › Peer-reviewed
  20. Published

    Annotation of next-generation sequencing protocol steps in the SRA (sequence read archive) and Big data for Science

    AlNasir, J. & Shanahan, H., 17 Feb 2015, p. 27. 1 p.

    Research output: Contribution to conference › Abstract › peer-review

  21. Published

    Fostering Reproducibility, Standardisation, Fault-tolerance and Deployability in Computational Pipelines using Nextflow Workflow Language - Adoption and Training at the ICR

    Alnasir, J., 5 Jul 2019.

    Research output: Contribution to conference › Abstract › peer-review

  22. Published

    Transcriptomics on Spark Workshop – Introducing Hercules – an Apache Spark MapReduce algorithm for quantifying non-uniform gene expression

    Alnasir, J. & Shanahan, H., 25 May 2016.

    Research output: Contribution to conference › Abstract › peer-review

  23. Published

    Transcriptomics: Leveraging a MapReduce algorithm and Python for gene-expression analysis on Apache Spark

    Alnasir, J. & Shanahan, H. (ed.), 20 Jul 2016.

    Research output: Contribution to conference › Abstract › peer-review

  24. Other › Research › Peer-reviewed
  25. Published

    Applying Apache Hadoop, Hive and Map Reduce to Legacy Systems and Applications

    AlNasir, J., 28 May 2015.

    Research output: Contribution to conference › Other › peer-review

Find an expert

Computer Science home
Research
Profile
Researchers
Publications
Projects