Dr Jamie Alnasir
- Software › Research
- Published
Artemis -- Python library for reading/writing PDB files and computing dihedral angles
Alnasir, J., 1 Nov 2014Research output: Non-textual form › Software
- Published
Choose-Survey
Alnasir, J., Anderberg, D., Chevalier, A., Luhrmann, M. & Pavan, R., 1 Sep 2015Research output: Non-textual form › Software
- Published
- Published
Push notifications for the Choose-Survey project
Alnasir, J. & Luhrmann, M., 1 Sep 2016Research output: Non-textual form › Software
- Published
Zeus desktop molecular visualisation software: Molecular viewer for WIndows
Alnasir, J., 1 Jul 2010Research output: Non-textual form › Software
- Doctoral Thesis › Research
- Unpublished
The Analysis of High-Throughput Biological Datasets Utilising Distributed Computing
Alnasir, J., 2018, (Unpublished) 259 p.Research output: Thesis › Doctoral Thesis
- Article › Research › Peer-reviewed
- Published
A Novel Method to Detect Bias in Short Read NGS Data
Alnasir, J. & Shanahan, H., 2017, In : Journal of Integrative Bioinformatics. 14, 3, p. 1-9 9 p.Research output: Contribution to journal › Article
- Published
Cyclisation of Cell-Penetrating PDZ-Binding Peptides Directed to PSD95
Dabhi, S., Duberly, K., Alnasir, J., Wijesiriwardana, N. & Austen, B., 2019, In : American Research Journal of Chemistry. 3, 1, p. 1-11 11 p.Research output: Contribution to journal › Article
- Published
Investigation into the annotation of protocol sequencing steps in the sequence read archive
AlNasir, J. & Shanahan, H., 1 Dec 2015, In : GigaScience. 4, 1, p. 1-11 11 p.Research output: Contribution to journal › Article
- In preparation
PDB-Hadoop: Parallelising Legacy applications on the Protein Databank using Apache Hadoop
AlNasir, J. & Shanahan, H., 2015, (In preparation) In : Bioinformatics.Research output: Contribution to journal › Article
- Published
The application of Hadoop in structural bioinformatics
Alnasir, J. & Shanahan, H., 20 Nov 2018, In : Briefings in Bioinformatics. p. 1-10 10 p., bby106.Research output: Contribution to journal › Article
- Published
Transcriptomics: Quantifying Non-Uniform Read Distribution Using MapReduce
Alnasir, J. & Shanahan, H., 27 Dec 2018, In : International Journal for the Foundations of Computer Science. 29, 8, 20 p.Research output: Contribution to journal › Article
- Poster › Research › Peer-reviewed
- Published
Characterisation of cyclic neuroprotective PDZ binding ligands
AlNasir, J. & Austen, B., 8 Feb 2011.Research output: Contribution to conference › Poster
- Published
PDB-Hadoop: Parallelising user applications on the protein databank using Apache Hadoop
AlNasir, J. & Shanahan, H., Jul 2015.Research output: Contribution to conference › Poster
- Abstract › Research › Peer-reviewed
- Published
Annotation of next-generation sequencing protocol steps in the SRA (sequence read archive) and Big data for Science
AlNasir, J. & Shanahan, H., 17 Feb 2015, p. 27. 1 p.Research output: Contribution to conference › Abstract
- Published
Fostering Reproducibility, Standardisation, Fault-tolerance and Deployability in Computational Pipelines using Nextflow Workflow Language - Adoption and Training at the ICR
Alnasir, J., 5 Jul 2019.Research output: Contribution to conference › Abstract
- Published
Transcriptomics on Spark Workshop – Introducing Hercules – an Apache Spark MapReduce algorithm for quantifying non-uniform gene expression
Alnasir, J. & Shanahan, H., 25 May 2016.Research output: Contribution to conference › Abstract
- Published
Transcriptomics: Leveraging a MapReduce algorithm and Python for gene-expression analysis on Apache Spark
Alnasir, J. & Shanahan, H. (ed.), 20 Jul 2016.Research output: Contribution to conference › Abstract
- Other › Research › Peer-reviewed
- Published
Applying Apache Hadoop, Hive and Map Reduce to Legacy Systems and Applications
AlNasir, J., 28 May 2015.Research output: Contribution to conference › Other