Professor Hugh Shanahan

  1. Published

    “Ethics When You Least Expect It”: A Modular Approach to Short Course Data Ethics Instruction

    Bezuidenhout, L., Quick, R. & Shanahan, H., 17 Feb 2020, In : Science and Engineering Ethics. p. 1-25 25 p.

    Research output: Contribution to journalArticle

  2. Submitted

    “Ethics When You Least Expect It”: A Modular Approach to Data Ethics Instruction

    Shanahan, H., Bezuidenhout, L. & Quick, R., 2018, (Submitted).

    Research output: Contribution to conferencePaper

  3. Submitted

    9 Simple recommendations for teaching data skills

    Shanahan, H., 16 Apr 2019, (Submitted) In : Data Science Journal.

    Research output: Contribution to journalArticle

  4. Published
  5. Published

    A non-perturbative calculation of the mass of the B-c

    Shanahan, H. P., Boyle, P., Davies, C. T. H., Newton, H. & UKQCD Collaboration, 6 May 1999, In : Physics Letters B. 453, 3-4, p. 289-294 6 p.

    Research output: Contribution to journalArticle

  6. Published

    A novel high-throughput in vivo molecular screen for shade avoidance mutants identifies a novel phyA mutation

    Wang, X., Roig-Villanova, I., Khan, S., Shanahan, H., Quail, P. H., Martinez-Garcia, J. F. & Devlin, P. F., 2011, In : Journal of Experimental Botany. 62, 8, p. 2973-2987 15 p.

    Research output: Contribution to journalArticle

  7. Published

    A Novel Method to Detect Bias in Short Read NGS Data

    Alnasir, J. & Shanahan, H., 2017, In : Journal of Integrative Bioinformatics. 14, 3, p. 1-9 9 p.

    Research output: Contribution to journalArticle

  8. Published

    A study of the quenched (b)over-bar-c mass spectrum at beta=6.2

    Davies, C. T. H., Lidsey, A. J. & Shanahan, H. P., Apr 1998, In : Nuclear Physics B - Proceedings Supplements. 63, p. 323-325 3 p.

    Research output: Contribution to journalArticle

  9. Published

    Amino acid architecture and the distribution of polar atoms on the surfaces of proteins

    Shanahan, H. P. & Thornton, J. M., 15 Aug 2005, In : BIOPOLYMERS. 78, 6, p. 318-328 11 p.

    Research output: Contribution to journalArticle

  10. Published

    An examination of the conservation of surface patch polarity for proteins

    Shanahan, H. P. & Thornton, J. M., 22 Sep 2004, In : Bioinformatics. 20, 14, p. 2197-2204 8 p.

    Research output: Contribution to journalArticle

  11. Forthcoming

    An Overview of Gene Regulation

    Shanahan, H. & Harrison, A., 2013, (Accepted/In press) Approaches to Integrative Bioinformatics. Chen, MI. & Hofstaedt, R. (eds.). Springer, p. 21-69

    Research output: Chapter in Book/Report/Conference proceedingChapter

  12. Published
  13. Published

    B meson decay constants from two-flavor lattice QCD with nonrelativistic heavy quarks

    Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A. & Yoshie, T., 1 Sep 2001, In : Physical Review D . 6405, 5, p. - 24 p.

    Research output: Contribution to journalArticle

  14. Published

    Bioinformatics on the cloud computing platform Azure

    Shanahan, H., Harrison, A. & Owen, A. M., 22 Jul 2014, In : PLoS ONE. 9, 7, p. e102642

    Research output: Contribution to journalArticle

  15. Published

    Biological Big Bytes: Integrative Analysis of Large Biological Datasets

    Shanahan, H., Chen, M., Harrison, A. & Orlov, Y., 13 Sep 2017, In : Journal of Integrative Bioinformatics. 14, 3, 2 p.

    Research output: Contribution to journalEditorial

  16. Published

    Calculation of K -> pi matrix elements in quenched domain-wall QCD

    Khan, A. A., Aoki, S., Aoki, Y., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Izubuchi, T., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K. I., Noaki, J., Okawa, M., Shanahan, H. P., Taniguchi, Y., Ukawa, A., Yoshie, T. & 1 others, CP-PACS collaboration, Mar 2001, In : Nuclear Physics B - Proceedings Supplements. 94, p. 283-286 4 p.

    Research output: Contribution to journalArticle

  17. Published

    Can we improve on the identification of transcription factor binding sites?

    Shanahan, H. P., 2009, p. 39-40. 2 p.

    Research output: Contribution to conferenceOther

  18. Published

    Chiral properties of domain-wall quarks in quenched QCD

    Khan, A. A., Aoki, S., Aoki, Y., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Izubuchi, T., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K. I., Noaki, J., Okawa, M., Shanahan, H. P., Taniguchi, Y., Ukawa, A. & 2 others, Yoshie, T. & CP-PACS Collaboration, 1 Jun 2001, In : Physical Review D . 6311, 11, p. - 19 p.

    Research output: Contribution to journalArticle

  19. Published

    Decay constants of B and D mesons from improved relativistic lattice QCD with two flavors of sea quarks

    Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, 1 Aug 2001, In : Physical Review D . 6403, 3, p. - 17 p.

    Research output: Contribution to journalArticle

  20. E-pub ahead of print

    Dissecting the chromatin interactome of microRNA genes

    Chen, D., Fu, L-Y., Zhang, Z., Yu, G., Zhang, H., Jiang, L., Harrison, A., Shanahan, H., Klukas, C., Zhang, H-Y., Ruan, Y., Chen, LI-LI. & Chen, M., 20 Dec 2013, In : Nucleic Acids Research.

    Research output: Contribution to journalArticle

  21. Published

    Distinct light-initiated gene expression and cell cycle programs in the shoot apex and cotyledons of Arabidopsis

    López-Juez, E., Dillon, E., Magyar, Z., Khan, S., Hazeldine, S., de Jager, S. M., Murray, J. A., Beemster, G. T., Bögre, L. & Shanahan, H., Apr 2008, In : Plant Cell. 20, 4, p. 947-968 22 p.

    Research output: Contribution to journalArticle

  22. Published

    Dynamical quark effects on light quark masses

    Khan, A. A., Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, 27 Nov 2000, In : Physical Review Letters. 85, 22, p. 4674-4677 4 p.

    Research output: Contribution to journalArticle

  23. Published

    Effect of tree-level and mean-field improvement on the light-hadron spectrum in quenched QCD

    Shanahan, H. P., Davies, C. T. H., Bowler, K. C., Kenway, R. D., Richards, D. G., Rowland, P. A., Ryan, S. M., Lacock, P., Michael, C., Burford, D. R., Stella, N. & Wittig, H., 1 Feb 1997, In : Physical Review D . 55, 3, p. 1548-1558 11 p.

    Research output: Contribution to journalArticle

  24. Published

    Eigenvalues of the hermitian Wilson-Dirac operator and chiral properties of the domain-wall fermion

    Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Izubuchi, T., Kanaya, K., Kanebo, T., Kuramashi, Y., Manke, T., Nagai, K. I., Noaki, J., Okawa, M., Shanahan, H. P., Taniguchi, Y., Ukawa, A. & Yoshie, T., Mar 2001, In : Nuclear Physics B - Proceedings Supplements. 94, p. 725-728 4 p.

    Research output: Contribution to journalArticle

  25. Submitted

    Embedding Open Science practice into Data Science Training

    Shanahan, H., 1 Jan 2019, (Submitted).

    Research output: Contribution to conferencePoster

  26. Published

    Equation of state in finite-temperature QCD with improved Wilson quarks

    Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okamoto, M., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP PACS Collaboration, Apr 2000, In : Nuclear Physics B - Proceedings Supplements. 83-4, p. 360-362 3 p.

    Research output: Contribution to journalArticle

  27. Published

    Equation of state in finite-temperature QCD with two flavors of improved Wilson quarks

    Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K. I., Okamoto, M., Okawa, M., Shanahan, H. P., Taniguchi, Y., Ukawa, A. & Yoshie, T., 1 Oct 2001, In : Physical Review D . 6407, 7, p. art. no.-074510 17 p.

    Research output: Contribution to journalArticle

  28. Published

    Erratum: Dynamical quark effects on light quark masses (vol 85, pg 4674, 2000)

    Khan, A. A., Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, 17 Jan 2003, In : Physical Review Letters. 90, 2, p. - 2 p.

    Research output: Contribution to journalArticle

  29. Published

    Eta meson mass and topology in QCD with two light flavors

    Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, Apr 2000, In : Nuclear Physics B - Proceedings Supplements. 83-4, p. 162-164 3 p.

    Research output: Contribution to journalArticle

  30. Published

    FORM-FACTORS FOR B-]PI-L(V)OVER-BAR(L) AND B-]K-ASTERISK-GAMMA DECAYS ON THE LATTICE

    BURFORD, D. R., DUONG, H. D., FLYNN, J. M., GOUGH, B. J., HAZEL, N. M., NIEVES, J. & SHANAHAN, H. P., 7 Aug 1995, In : Nuclear Physics B. 447, 2-3, p. 425-437 13 p.

    Research output: Contribution to journalArticle

  31. Published

    Full QCD light hadron spectrum and quark masses: Final results from CP-PACS

    Khan, A. A., Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K. I., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP PACS Collaboration, Mar 2001, In : Nuclear Physics B - Proceedings Supplements. 94, p. 229-232 4 p.

    Research output: Contribution to journalArticle

  32. Published

    Full QCD light hadron spectrum from the CP-PACS

    Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, Mar 1999, In : Nuclear Physics B - Proceedings Supplements. 73, p. 192-194 3 p.

    Research output: Contribution to journalArticle

  33. Published

    Heavy hybrid states from NRQCD

    Manke, T., Drummond, I. T., Horgan, R. R. & Shanahan, H. P., 1 Apr 1998, In : Physical Review D . 57, 7, p. R3829-R3832 4 p.

    Research output: Contribution to journalArticle

  34. Published

    Heavy quark physics in N-f=2 QCD

    Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, Mar 1999, In : Nuclear Physics B - Proceedings Supplements. 73, p. 375-377 3 p.

    Research output: Contribution to journalArticle

  35. Published

    Heavy quarkonia from anisotropic and isotropic lattices

    Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP PACS Collaboration, Apr 2000, In : Nuclear Physics B - Proceedings Supplements. 83-4, p. 319-321 3 p.

    Research output: Contribution to journalArticle

  36. Published

    Heavy-light decay constants from clover heavy quark action in QCD with two flavors of dynamical quarks

    Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP PACS Collaboration, Apr 2000, In : Nuclear Physics B - Proceedings Supplements. 83-4, p. 331-333 3 p.

    Research output: Contribution to journalArticle

  37. Published

    Heavy-light decay constants from relativistic N-f=2, 0 QCD

    Shanahan, H. P. & CP-PACS Collaboration, 2000, HIGH ENERGY PHYSICS 99, PROCEEDINGS. BRISTOL: IOP PUBLISHING LTD, p. 943-944 2 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  38. Published

    Heavy-light spectrum and decay constant from NRQCD with two flavors of dynamical quarks

    Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP PACS Collaboration, Apr 2000, In : Nuclear Physics B - Proceedings Supplements. 83-4, p. 265-267 3 p.

    Research output: Contribution to journalArticle

  39. Published

    How many extant pinniped species remain to be descibed ?

    Shanahan, H., Woodley, M. & M., N., 2009, In : Historical Biology. 20, 4, p. 225-235

    Research output: Contribution to journalArticle

  40. Published

    HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix structural motif

    Ferrer-Costa, C., Shanahan, H. P., Jones, S. & Thornton, J. M., 15 Sep 2005, In : Bioinformatics. 21, 18, p. 3679-3680 2 p.

    Research output: Contribution to journalArticle

  41. Published

    Hybrid quarkonia on asymmetric lattices

    Manke, T., Shanahan, H. P., Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K., Okawa, M., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, 31 May 1999, In : Physical Review Letters. 82, 22, p. 4396-4399 4 p.

    Research output: Contribution to journalArticle

  42. Published

    Hybrid quarkonia with dynamical sea quarks

    Manke, T., Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, 1 Nov 2001, In : Physical Review D . 6409, 9, p. - 4 p.

    Research output: Contribution to journalArticle

  43. Published

    Hybrid quarkonia with high statistics from NRQCD

    Manke, T., Drummond, I. T., Horgan, R. R., Shanahan, H. P. & UKQCD Collaboration, Apr 1998, In : Nuclear Physics B - Proceedings Supplements. 63, p. 332-334 3 p.

    Research output: Contribution to journalArticle

  44. Published

    Identifying DNA-binding proteins using structural motifs and the electrostatic potential

    Shanahan, H. P., Garcia, M. A., Jones, S. & Thornton, J. M., 2004, In : Nucleic Acids Research. 32, 16, p. 4732-4741 10 p.

    Research output: Contribution to journalArticle

  45. Published

    Investigation into the annotation of protocol sequencing steps in the sequence read archive

    AlNasir, J. & Shanahan, H., 1 Dec 2015, In : GigaScience. 4, 1, p. 1-11 11 p.

    Research output: Contribution to journalArticle

  46. Published

    Jasmonate controls leaf growth by repressing cell proliferation and the onset of endoreduplication while maintaining a potential stand-by mode

    Noir, S., Bömer, M., Takahashi, N., Ishida, T., Tsui, T-L., Balbi, V., Shanahan, H., Sugimoto, K. & Devoto, A., Apr 2013, In : Plant physiology. 161, 4, p. 1930-1951

    Research output: Contribution to journalArticle

  47. Published

    Kaon B parameter from quenched domain-wall QCD

    Khan, A. A., Aoki, S., Aoki, Y., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Izubuchi, T., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K. I., Okawa, M., Shanahan, H. P., Taniguchi, Y., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, 1 Dec 2001, In : Physical Review D . 6411, 11, p. - 21 p.

    Research output: Contribution to journalArticle

  48. Published

    Kaon B-parameter from quenched domain-wall QCD

    Khan, A. A., Aoki, S., Aoki, Y., Burkhalter, R., Ejiri, S., Fikugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Izubuchi, T., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K. I., Noaki, J., Okawa, M., Shanahan, H. P., Taniguchi, Y., Ukawa, A., Yoshie, T. & 1 others, CP-PACS collaboration, Mar 2001, In : Nuclear Physics B - Proceedings Supplements. 94, p. 287-290 4 p.

    Research output: Contribution to journalArticle

  49. Published

    Lattice calculation of the branching ratio for some of the exclusive modes of B-]S-gamma

    BOWLER, K. C., HAZEL, N. M., HENTY, D. S., HOEBER, H., KENWAY, R. D., RICHARDS, D. G., SHANAHAN, H. P., SIMONE, J. N., FLYNN, J. M., GOUGH, B. J., ALLTON, C., LELLOUCH, L., NIEVES, J. & WITTIG, H., 1 May 1995, In : Physical Review D . 51, 9, p. 4955-4970 16 p.

    Research output: Contribution to journalArticle

  50. Published

    Lattice calculation of the penguin diagram decay B→K*γ

    BOWLER, K. C., HAZEL, N. M., HENTY, D. S., HOEBER, H., KENWAY, R. D., RICHARDS, D. G., SHANAHAN, H. P., SIMONE, J. N., FLYNN, J. M. & GOUGH, B. J., 7 Mar 1994, In : Physical Review Letters. 72, 10, p. 1398-1401 4 p.

    Research output: Contribution to journalArticle

  51. Published

    Lattice study of the decay (B)over-bar(0)->p(+)l(-)(v)over-bar(l): Model-independent determination of vertical bar V-ub vertical bar

    Flynn, J. M., Nieves, J., Bowler, K. C., Hazel, N. M., Henty, D. S., Hoeber, H., Kenway, R. D., Richards, D. G., Gough, B. J., Lellouch, L. P. & Shanahan, H. P., 19 Feb 1996, In : Nuclear Physics B. 461, 1-2, p. 327-349 23 p.

    Research output: Contribution to journalArticle

  52. Published

    Light hadron spectroscopy with two flavors of dynamical quarks on the lattice

    Khan, A. A., Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, 1 Mar 2002, In : Physical Review D . 65, 5, p. - 50 p.

    Research output: Contribution to journalArticle

  53. Published

    Light hadron spectroscopy with two flavors of dynamical quarks on the lattice (vol 65, art no 054505, 2002)

    Khan, A. A., Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, 1 Mar 2003, In : Physical Review D . 67, 5, p. - 6 p.

    Research output: Contribution to journalArticle

  54. Published

    Light hadron spectrum and quark masses from quenched lattice QCD

    Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A. & Yoshie, T., 1 Feb 2003, In : Physical Review D . 67, 3, p. - 46 p.

    Research output: Contribution to journalArticle

  55. Published

    Light hadron spectrum and quark masses in QCD with two flavors of dynamical quarks

    Khan, A. A., Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, Apr 2000, In : Nuclear Physics B - Proceedings Supplements. 83-4, p. 176-178 3 p.

    Research output: Contribution to journalArticle

  56. In preparation

    modCDF - modifying CDF's for microarrays using sequence similarity

    Shanahan, H., Harrison, A., Upton, G. & Memon, F., 2012, (In preparation) In : Bioinformatics. 2 p.

    Research output: Contribution to journalArticle

  57. Published

    Normalized Affymetrix expression data are biased by G-quadruplex formation

    Shanahan, H. P., Memon, F. N., Upton, G. J. G. & Harrison, A. P., 1 Apr 2012, In : Nucleic Acids Research. 40, 8, p. 3307-3315 9 p.

    Research output: Contribution to journalArticle

  58. Published

    NRQCD on an anisotropic lattice

    Drummond, I. T., Horgan, R. R., Manke, T. & Shanahan, H. P., Mar 1999, In : Nuclear Physics B - Proceedings Supplements. 73, p. 336-338 3 p.

    Research output: Contribution to journalArticle

  59. Published
  60. In preparation

    PDB-Hadoop: Parallelising Legacy applications on the Protein Databank using Apache Hadoop

    AlNasir, J. & Shanahan, H., 2015, (In preparation) In : Bioinformatics.

    Research output: Contribution to journalArticle

  61. Published

    Quenched charmonium spectrum on anisotropic lattices

    Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K. I., Okamoto, M., Okawa, M., Shanahan, H. P., Taniguchi, Y., Ukawa, A., Yoshie, T. & CP-PACS collaboration, Mar 2001, In : Nuclear Physics B - Proceedings Supplements. 94, p. 325-328 4 p.

    Research output: Contribution to journalArticle

  62. Published

    Quenched heavy-light decay constants

    BAXTER, R. M., BOOTH, S. P., BOWLER, K. C., COLLINS, S., HENTY, D. S., KENWAY, R. D., RICHARDS, D. G., SHANAHAN, H. P., SIMONE, J. N., SIMPSON, A. D., WILKES, B. E., EWING, A. K., LELLOUCH, L., SACHRAJDA, C. T. & WITTIG, H., 1 Feb 1994, In : Physical Review D . 49, 3, p. 1594-1605 12 p.

    Research output: Contribution to journalArticle

  63. Published

    Quenched light hadron spectrum

    Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, 10 Jan 2000, In : Physical Review Letters. 84, 2, p. 238-241 4 p.

    Research output: Contribution to journalArticle

  64. Published

    Quenched light hadron spectrum with the Wilson quark action: Final results from CP-PACS

    Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, Mar 1999, In : Nuclear Physics B - Proceedings Supplements. 73, p. 189-191 3 p.

    Research output: Contribution to journalArticle

  65. Published

    Quenched QCD with domain-wall fermions on coarse lattices

    Khan, A. A., Aoki, S., Aoki, Y., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Izubuchi, T., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Taniguchi, Y., Ukawa, A., Yoshie, T. & 1 others, CP-PACS Collaboration, Apr 2000, In : Nuclear Physics B - Proceedings Supplements. 83-4, p. 591-593 3 p.

    Research output: Contribution to journalArticle

  66. Published

    Quenched QCD with O(a) improvement: The spectrum of light hadrons

    Bowler, K. C., Boyle, P., Garden, J., Kenway, R. D., Richards, D. G., Rowland, P. A., Ryan, S. M., Simma, H., Michael, C., Shanahan, H. P. & Wittig, H., 1 Sep 2000, In : Physical Review D . 6205, 5, p. - 19 p.

    Research output: Contribution to journalArticle

  67. Published

    Regulatory processes underscoring the light control of shoot meristem activity and leaf initiation

    Lopez Juez, E., Dillon, E., Magyar, Z., Khan, S., Hazeldine, S., Murray, J. A., Beemster, G. T., Bogre, L. & Shanahan, H., Jun 2009, p. S205-S205. 1 p.

    Research output: Contribution to conferenceAbstract

  68. Published
  69. Published

    Sea quark effects on quarkonia

    Manke, T., Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A. & Yoshie, T., 1 Dec 2000, In : Physical Review D . 6211, 11, p. - 13 p.

    Research output: Contribution to journalArticle

  70. Published

    Spin effects in heavy hybrid mesons on an anisotropic lattice

    Drummond, I. T., Goodman, N. A., Horgan, R. R., Shanahan, H. P. & Storoni, L. C., 6 Apr 2000, In : Physics Letters B. 478, 1-3, p. 151-160 10 p.

    Research output: Contribution to journalArticle

  71. E-pub ahead of print

    Systems Metagenomics: Applying Systems Biology Thinking to Human Microbiome Analysis

    Radwan, G. S. & Shanahan, H., 24 Aug 2018, Computational Methods in Systems Biology - 16th International Conference, CMSB 2018, Proceedings. Springer-Verlag, Vol. 11095 LNBI. p. 318-321 4 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11095 LNBI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  72. Published
  73. Published

    Systems Metagenomics

    Shanahan, H. & Radwan, G., 15 Jul 2018.

    Research output: Contribution to conferencePoster

  74. Published

    Teaching Data Science and Cloud Computing in Low and Middle Income Countries

    Shanahan, H., Harrison, A. & May, S., 23 Nov 2015, In : Advanced Techniques in Biology & Medicine. 3, 3, p. 1-5 5 p., 1000150.

    Research output: Contribution to journalArticle

  75. Submitted

    Teaching FAIR

    Shanahan, H., 4 May 2019, (Submitted) In : Data Intelligence.

    Research output: Contribution to journalArticle

  76. Published

    The application of Hadoop in structural bioinformatics

    Alnasir, J. & Shanahan, H., 20 Nov 2018, In : Briefings in Bioinformatics. p. 1-10 10 p., bby106.

    Research output: Contribution to journalArticle

  77. Published

    The Chern-Simons number as an order parameter: classical sphaleron transitions for SU(2)-Higgs field theories for m(H)approximate to 120 GeV

    Shanahan, H. P. & Davis, A. C., 9 Jul 1998, In : Physics Letters B. 431, 1-2, p. 135-140 6 p.

    Research output: Contribution to journalArticle

  78. Published

    The identification of Transcription Factor Binding Sites using string kernels

    Shanahan, H., 10 Sep 2010.

    Research output: Contribution to conferenceOther

  79. Published

    The Isgur-Wise function from the lattice

    BOOTH, S. P., BOWLER, K. C., HAZEL, N. M., HENTY, D. S., HOEBER, H., KENWAY, R. D., RICHARDS, D. G., SHANAHAN, H. P., SIMONE, J. N., SIMPSON, A. D., LELLOUCH, L., NIEVES, J., SACHRAJDA, C. T. & WITTIG, H., 24 Jan 1994, In : Physical Review Letters. 72, 4, p. 462-465 4 p.

    Research output: Contribution to journalArticle

  80. Published

    The static quark potential in full QCD

    Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, Mar 1999, In : Nuclear Physics B - Proceedings Supplements. 73, p. 216-218 3 p.

    Research output: Contribution to journalArticle

  81. Published

    There are no R3 x S1 Gravitational Instantons

    Shanahan, H. & O'Murachadha, N., Mar 1993, In : Physical Review Letters. 70, 11, p. 1576 2 p.

    Research output: Contribution to journalArticle

  82. Published

    Topological susceptibility in lattice QCD with two flavors of dynamical quarks

    Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, 1 Dec 2001, In : Physical Review D . 6411, 11, p. - 10 p.

    Research output: Contribution to journalArticle

  83. Published

    Transcriptomics: Quantifying Non-Uniform Read Distribution Using MapReduce

    Alnasir, J. & Shanahan, H., 27 Dec 2018, In : International Journal for the Foundations of Computer Science. 29, 8, 20 p.

    Research output: Contribution to journalArticle

  84. Published
  85. Published
  86. Published

    Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins

    Jones, S., Shanahan, H. P., Berman, H. M. & Thornton, J. M., 15 Dec 2003, In : Nucleic Acids Research. 31, 24, p. 7189-7198 10 p.

    Research output: Contribution to journalArticle

  87. Published

    Y spectrum from NRQCD with improved action

    Manke, T., Drummond, I. T., Horgan, R. R. & Shanahan, H. P., 11 Sep 1997, In : Physics Letters B. 408, 1-4, p. 308-314 7 p.

    Research output: Contribution to journalArticle