Dr Haixuan Yang

  1. 2019
  2. Forthcoming
  3. 2016
  4. Published

    An expanded evaluation of protein function prediction methods shows an improvement in accuracy

    Jiang, Y., Oron, T. R., Clark, W. T., Bankapur, A. R., D'Andrea, D., Lepore, R., Funk, C. S., Kahanda, I., Verspoor, K. M., Ben-Hur, A., Koo, D. C. E., Penfold-Brown, D., Shasha, D., Youngs, N., Bonneau, R., Lin, A., Sahraeian, S. M. E., Martelli, P. L., Profiti, G., Casadio, R. & 127 others, Cao, R., Zhong, Z., Cheng, J., Altenhoff, A., Skunca, N., Dessimoz, C., Dogan, T., Hakala, K., Kaewphan, S., Mehryary, F., Salakoski, T., Ginter, F., Fang, H., Smithers, B., Oates, M., Gough, J., Törönen, P., Koskinen, P., Holm, L., Chen, C. T., Hsu, W. L., Bryson, K., Cozzetto, D., Minneci, F., Jones, D. T., Chapman, S., Bkc, D., Khan, I. K., Kihara, D., Rappoport, N., Ofer, D., Stern, A., Cibrian-Uhalte, E., Denny, P., Foulger, R. E., Hieta, R., Legge, D., Lovering, R. C., Magrane, M., Melidoni, A. N., Mutowo-Meullenet, P., Pichler, K., Shypitsyna, A., Li, B., Zakeri, P., ElShal, S., Tranchevent, L. C., Das, S., Dawson, N. L., Lee, D., Lees, J. G., Sillitoe, I., Bhat, P., Nepusz, T., Romero, A. E., Sasidharan, R., Yang, H., Paccanaro, A., Gillis, J., Sedeño-Cortés, A. E., Pavlidis, P., Feng, S., Cejuela, J. M., Goldberg, T., Hamp, T., Richter, L., Salamov, A., Gabaldon, T., Marcet-Houben, M., Supek, F., Gong, Q., Ning, W., Zhou, Y., Tian, W., Falda, M., Fontana, P., Lavezzo, E., Toppo, S., Ferrari, C., Giollo, M., Piovesan, D., Tosatto, S. C. E., del Pozo, A., Fernández, J. M., Maietta, P., Valencia, A., Tress, M. L., Benso, A., Di Carlo, S., Politano, G., Savino, A., Rehman, H. U., Re, M., Mesiti, M., Valentini, G., Bargsten, J. W., van Dijk, A. D. J., Gemovic, B., Glisic, S., Perovic, V., Veljkovic, V., Veljkovic, N., Almeida-e-Silva, D. C., Vencio, R. Z. N., Sharan, M., Vogel, J., Kansakar, L., Zhang, S., Vucetic, S., Wang, Z., Sternberg, M. J. E., Wass, M. N., Huntley, R. P., Martin, M. J., O'Donovan, C., Robinson, P. N., Moreau, Y., Tramontano, A., Babbitt, P. C., Brenner, S. E., Linial, M., Orengo, C. A., Rost, B., Greene, C. S., Mooney, S. D., Friedberg, I. & Radivojac, P., 7 Sep 2016, In : Genome Biology. 17, p. 1-19 19 p., 184.

    Research output: Contribution to journalArticle

  5. 2014
  6. Published

    Progressive promoter element combinations classify conserved orthogonal plant circadian gene expression modules

    Smieszek, S. P., Yang, H., Paccanaro, A. & Devlin, P. F., 6 Oct 2014, In : Journal of the Royal Society. Interface. 11, 99, p. 1-11 11 p.

    Research output: Contribution to journalArticle

  7. Published

    GOssTo: a stand-alone application and a web tool for calculating semantic similarities on the Gene Ontology

    Caniza, H., Romero, A. E., Heron, S., Yang, H., Devoto, A., Frasca, M., Mesiti, M., Valentini, G. & Paccanaro, A., 1 Aug 2014, In : Bioinformatics. 30, 15, p. 2235-6 2 p.

    Research output: Contribution to journalArticle

  8. 2013
  9. Published

    A large-scale evaluation of computational protein function prediction

    Radivojac, P., Clark, W. T., Oron, T. R., Schnoes, A. M., Wittkop, T., Sokolov, A., Graim, K., Funk, C., Verspoor, K., Ben-Hur, A., Pandey, G., Yunes, J. M., Talwalkar, A. S., Repo, S., Souza, M. L., Piovesan, D., Casadio, R., Wang, Z., Cheng, J., Fang, H. & 82 others, Gough, J., Koskinen, P., Törönen, P., Nokso-Koivisto, J., Holm, L., Cozzetto, D., Buchan, D. W. A., Bryson, K., Jones, D. T., Limaye, B., Inamdar, H., Datta, A., Manjari, S. K., Joshi, R., Chitale, M., Kihara, D., Lisewski, A. M., Erdin, S., Venner, E., Lichtarge, O., Rentzsch, R., Yang, H., Romero, A. E., Bhat, P., Paccanaro, A., Hamp, T., Kaßner, R., Seemayer, S., Vicedo, E., Schaefer, C., Achten, D., Auer, F., Boehm, A., Braun, T., Hecht, M., Heron, M., Hönigschmid, P., Hopf, T. A., Kaufmann, S., Kiening, M., Krompass, D., Landerer, C., Mahlich, Y., Roos, M., Björne, J., Salakoski, T., Wong, A., Shatkay, H., Gatzmann, F., Sommer, I., Wass, M. N., Sternberg, M. J. E., Škunca, N., Supek, F., Bošnjak, M., Panov, P., Džeroski, S., Šmuc, T., Kourmpetis, Y. A. I., van Dijk, A. D. J., ter Braak, C. J. F., Zhou, Y., Gong, Q., Dong, X., Tian, W., Falda, M., Fontana, P., Lavezzo, E., Di Camillo, B., Toppo, S., Lan, L., Djuric, N., Guo, Y., Vucetic, S., Bairoch, A., Linial, M., Babbitt, P. C., Brenner, S. E., Orengo, C., Rost, B., Mooney, S. D. & Friedberg, I., Mar 2013, In : Nature Methods. 10, 3, p. 221-7 7 p.

    Research output: Contribution to journalArticle

  10. 2012
  11. Published

    A Census of Human Soluble Protein Complexes

    Havugimana, P. C., Hart, G. T., Nepusz, T., Yang, H., Turinsky, A. L., Li, Z., Wang, P. I., Boutz, D. R., Fong, V., Phanse, S., Babu, M., Craig, S. A., Hu, P., Wan, C., Vlasblom, J., Dar, V-N., Bezginov, A., Clark, G. W., Wu, G. C., Wodak, S. J. & 4 others, Tillier, E. R. M., Paccanaro, A., Marcotte, E. M. & Emili, A., 31 Aug 2012, In : Cell. 150, 5, p. 1068–1081

    Research output: Contribution to journalArticle

  12. Published

    Computational selection of transcriptomics experiments improves Guilt-by-Association analyses

    Bhat, P., Yang, H., Bogre, L., Devoto, A. & Paccanaro, A., 7 Aug 2012, In : PLoS ONE. 7, 8, e39681.

    Research output: Contribution to journalArticle

  13. Published

    Improving GO semantic similarity measures by exploring the ontology beneath the terms and modelling uncertainty

    Yang, H., Nepusz, T. & Paccanaro, A., 2012, In : Bioinformatics. 28, 10, p. 1383-1389 7 p.

    Research output: Contribution to journalArticle

  14. 2009
  15. Published

    A volume-based heat-diffusion classifier

    Yang, H., Lyu, M. R. & King, I., 1 Jan 2009, In : IEEE Transactions on Systems, Man and Cybernetics, Part B: Cybernetics. 39, 2, p. 417-430 14 p.

    Research output: Contribution to journalArticle

  16. Published

    Semi-nonnegative matrix factorization with global statistical consistency for collaborative filtering

    Ma, H., King, I., Lyu, M. R. & Yang, H., 1 Jan 2009, International Conference on Information and Knowledge Management, Proceedings. p. 767-775 9 p.

    Research output: Chapter in Book/Report/Conference proceedingOther contribution

  17. 2008
  18. Published

    Learning latent semantic relations from clickthrough data for query suggestion

    Ma, H., Yang, H., King, I. & Lyu, M. R., 1 Jan 2008, International Conference on Information and Knowledge Management, Proceedings. p. 709-718 10 p.

    Research output: Chapter in Book/Report/Conference proceedingOther contribution

  19. Published

    Mining social networks using heat diffusion processes for marketing candidates selection

    Ma, H., Yang, H., Lyu, M. R. & King, I., 1 Jan 2008, International Conference on Information and Knowledge Management, Proceedings. p. 233-242 10 p.

    Research output: Chapter in Book/Report/Conference proceedingOther contribution

  20. Published

    SoRec: Social recommendation using probabilistic matrix factorization

    Ma, H., Yang, H., Lyu, M. R. & King, I., 1 Jan 2008, International Conference on Information and Knowledge Management, Proceedings. p. 931-940 10 p.

    Research output: Chapter in Book/Report/Conference proceedingOther contribution

  21. Published
  22. Published
  23. 2007
  24. Published

    The generalized dependency degree between attributes

    Yang, H., King, I. & Lyu, M. R., 1 Dec 2007, In : Journal of the American Society for Information Science and Technology. 58, 14, p. 2280-2294 15 p.

    Research output: Contribution to journalArticle

  25. Published

    DiffusionRank: A possible penicillin for web spamming

    Yang, H., King, I. & Lyu, M. R., 1 Jan 2007, Proceedings of the 30th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, SIGIR'07. p. 431-438 8 p.

    Research output: Chapter in Book/Report/Conference proceedingOther contribution

  26. 2006
  27. Published

    A point-distribution index and its application to sensor-grouping in wireless sensor networks

    Zhou, Y., Yang, H., Lyu, M. R. & Ngai, EC-H., 1 Jan 2006, IWCMC 2006 - Proceedings of the 2006 International Wireless Communications and Mobile Computing Conference. Vol. 2006. p. 1171-1176 6 p.

    Research output: Chapter in Book/Report/Conference proceedingOther contribution

  28. Published

    Predictive random graph ranking on the web

    King, I., Lyu, M. R. & Yang, H., 1 Jan 2006, IEEE International Conference on Neural Networks - Conference Proceedings. p. 1825-1832 8 p.

    Research output: Chapter in Book/Report/Conference proceedingOther contribution

  29. 2005
  30. Published

    Predictive ranking: A novel page ranking approach by estimating the web structure

    Yang, H., King, I. & Lyu, M. R., 1 Jan 2005, 14th International World Wide Web Conference, WWW2005. p. 944-945 2 p.

    Research output: Chapter in Book/Report/Conference proceedingOther contribution

  31. 2002
  32. Published

    Two Operators on the Lattice of Completely Regular Semigroup Varieties

    Yang, H., 1 May 2002, In : Semigroup Forum. 64, 3, p. 397-424 28 p.

    Research output: Contribution to journalArticle

  33. 1998
  34. Published

    Identities of regular semigroup rings

    Yang, H., 1 Jan 1998, In : Semigroup Forum. 57, 2, p. 293-295 3 p.

    Research output: Contribution to journalArticle

  35. 1997
  36. Published

    The existence of identity of periodic semigroup rings

    Yang, H. X., Luo, Y. F. & Yang, H., Apr 1997, In : Chinese Science Bulletin. 42, 7, p. 614-615 2 p.

    Research output: Contribution to journalLetter