Dr Alexey Koloydenko

  1. 2019
  2. Published

    Estimation of Viterbi path in Bayesian hidden Markov models

    Lember, J., Gasbarra, D., Koloydenko, A. & Kuljus, K., Aug 2019, In : Metron. 77, 2 , p. 137-169 33 p.

    Research output: Contribution to journalArticle

  3. Published

    Clinical translation of Raman-based multimodal spectral histopathology for margin assessment during surgery of basal cell carcinoma

    Boitor, R., Kong, K., Varma, S., Koloydenko, A., Williams, H. & Notingher, I., 22 Jul 2019, Proceedings SPIE, Medical Laser Applications and Laser-Tissue Interactions IX, 110790G . SPIE - INT SOC OPTICAL ENGINEERING, Vol. 11079. p. 1-4 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  4. 2018
  5. Published

    Intra-operative spectroscopic assessment of surgical margins during breast conserving surgery

    Shipp, D. W., Rakha, E., Koloydenko, A. A., Macmillan, R. D., Ellis, I. & Notingher, I., 9 Jul 2018, In : Breast Cancer Research. 20, p. 1-14 14 p., 69.

    Research output: Contribution to journalArticle

  6. 2017
  7. Published

    Automated multimodal spectral histopathology for quantitative diagnosis of residual tumour during basal cell carcinoma surgery

    Boitor, R., Kong, K., Shipp, D., Varma, S., Koloydenko, A. A., Kulkarni, K., Elsheikh, S., Schut, T., Caspers, P., Puppels, G., van der Wolf, M., Sokolova, E., Nijsten, T. E. C., Salence, B., Williams, H. & Notingher, I., 22 Nov 2017, In : Biomedical Optics Express. 8, 12, p. 5749-5766 18 p.

    Research output: Contribution to journalArticle

  8. Published

    Time Pattern Analysis of Malware by Circular Statistics

    Pan, L., Tomlinson, A. & Koloydenko, A., 3 Jul 2017, Architectures for Networking and Communications Systems (ANCS), 2017 ACM/IEEE Symposium on. IEEE, p. 119-130 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  9. 2016
  10. Published

    Regularisation, interpolation and visualisation of diffusion tensor images using non-Euclidean statistics

    Zhou, D., Dryden, I., Koloydenko, A. A., Audenaert, K. & Bai, L., 2016, In : Journal of Applied Statistics. 43, 5, p. 943-978 36 p.

    Research output: Contribution to journalArticle

  11. 2014
  12. Published

    Towards intra-operative diagnosis of tumours during breast conserving surgery by selective-sampling Raman micro-spectroscopy

    Kong, K., Zaabar, F., Rakha, E., Ellis, I., Koloydenko, A. & Notingher, I., 25 Sep 2014, In : Physics in Medicine and Biology. 59, 20, p. 6141-6152 12 p.

    Research output: Contribution to journalArticle

  13. Published

    Increasing the speed of tumour diagnosis during surgery with selective scanning Raman microscopy

    Kong, K., Rowlands, C., Varma, S., Perkins, W., Leach, I., Koloydenko, A., Pitiot, A., Williams, H. & Notingher, I., 5 Sep 2014, In : Journal of Molecular Structure. 1073, p. 58-65 8 p.

    Research output: Contribution to journalArticle

  14. Published

    Bridging Viterbi and Posterior Decoding: A Generalized Risk Approach to Hidden Path Inference Based on Hidden Markov Models.

    Lember, J. & Koloydenko, A. A., Jan 2014, In : Journal of Machine Learning Research. 15, p. 1-58 58 p.

    Research output: Contribution to journalArticle

  15. 2013
  16. Published

    Diagnosis of tumors during tissue-conserving surgery with integrated autofluorescence and Raman scattering microscopy

    Kong, K., Rowlands, C., Varma, S., Perkins, W., Leach, I., Koloydenko, A., Williams, H. & Notingher, I., 17 Sep 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 38, p. 15189-15194 6 p.

    Research output: Contribution to journalArticle

  17. 2011
  18. Published

    Hidden Markov Models, Theory and Applications: Theory of Segmentation

    Lember, J., Kuljus, K. & Koloydenko, A., Apr 2011, Hidden Markov Models, Theory and Applications: Theory of Segmentation . Dymarski, P. (ed.). Rijeka, Croatia: InTech, p. 51-84 34 p. (Bioinformatics).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  19. Published

    Discrimination between basal cell carcinoma and hair follicles in skin tissue sections by Raman micro-spectroscopy

    Larraona-Puy, M., Ghita, A., Zoladek, A., Varma, S., Koloydenko, A., Perkins, W., Leach, I., Williams, H. & Notingher, I., 2011, In : Journal of Molecular Structure. 993, 1, p. 57-61 5 p.

    Research output: Contribution to journalArticle

  20. 2010
  21. Published

    A constructive proof of the existence of Viterbi processes

    Lember, J. & Koloydenko, A., Apr 2010, In : IEEE Transactions on Information Theory. 56, 4, p. 2017-2033 17 p.

    Research output: Contribution to journalArticle

  22. Published

    Towards Automated Diagnosis of Basal Cell Carcinoma

    Larraona-Puy, M., Ghita, A., Zoladek, A., Koloydenko, A., Perkins, W., Leach, I., Varma, S., Williams, H. & Notingher, I., 2010, American Institute of Physics Conference Series. Vol. 1267. p. 364-365 2 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  23. 2009
  24. Published

    Development of Raman microspectroscopy for automated detection and imaging of basal cell carcinoma

    Larraona-Puy, M., Ghita, A., Zoladek, A., Perkins, W., Koloydenko, A., Williams, H., Notingher, I., Leach, I. & Varma, S., 2009, In : Journal of Biomedical Optics. 14, p. 054031 1 p.

    Research output: Contribution to journalArticle

  25. Published

    Non-Euclidean statistics for covariance matrices, with applications to diffusion tensor imaging

    Dryden, I. L., Koloydenko, A. A. & Zhou, D., 2009, In : Annals of Applied Statistics. 3, 3, p. 1102-1123 22 p.

    Research output: Contribution to journalArticle

  26. Published

    Procrustes Analysis of Diffusion Tensor Data

    Zhou, D., Dryden, IL., Koloydenko, A. & Bai, L., 2009, Proceedings 17th Scientific Meeting, International Society for Magnetic Resonance in Medicine.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  27. 2008
  28. Published

    A Bayesian method with reparameterization for diffusion tensor imaging

    Zhou, D., Dryden, I. L., Koloydenko, A. & Li, B., 2008, Proceedings, SPIE conference. Medical Imaging. p. 69142J

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  29. Published

    Infinite Viterbi alignments in the two-state hidden Markov models

    Koloydenko, A. & Lember, J., 2008, In : Acta et Commentationes Universitatis Tartuensis de Mathematica. 12, p. 109-124 16 p.

    Research output: Contribution to journalArticle

  30. Published

    Symmetric measures via moments

    Koloydenko, A., 2008, In : Bernoulli. 14, 2, p. 362-390 29 p.

    Research output: Contribution to journalArticle

  31. Published

    The adjusted Viterbi training for hidden Markov models

    Lember, J. & Koloydenko, A., 2008, In : Bernoulli. 14, 1, p. 180-206 27 p.

    Research output: Contribution to journalArticle

  32. 2007
  33. Published

    Adjusted Viterbi training. Proof of Concept

    Lember, J. & Koloydenko, A., 2007, In : Probability in the Engineering and Informational Sciences. 21, 3, p. 451-475 25 p.

    Research output: Contribution to journalArticle

  34. Published

    On adjusted Viterbi training

    Koloydenko, A., Käärik, M. & Lember, J., 2007, In : Acta Applicandae Mathematicae. 96, 1, p. 309-326 18 p.

    Research output: Contribution to journalArticle

  35. 2005
  36. Published

    Robust acoustic object detection

    Amit, Y., Koloydenko, A. & Niyogi, P., 2005, In : Journal of the Acoustical Society of America. 118, p. 2634 1 p.

    Research output: Contribution to journalArticle

  37. 2000
  38. Published

    Modeling natural microimage statistics

    Koloydenko, A., 2000, UMI - Dissertations Publishing. 180 p.

    Research output: ThesisDoctoral Thesis

  39. 1999
  40. Published

    Invariant statistics and coding of natural microimages

    Geman, D. & Koloydenko, A., 1999, IEEE Workshop on Statistical and Computational Theories of Vision.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution