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  1. 2022
  2. Forthcoming

    Salicylic acid-mediated disturbance increases bacterial diversity in the phyllosphere but is overcome by a dominant core community

    Vincent, S., Ebertz, A., Spanu, P. D. & Devlin, P., 18 Jan 2022, (Accepted/In press) In: Frontiers in microbiology.

    Research output: Contribution to journalArticlepeer-review

  3. 2021
  4. Published

    Protein Function Prediction for newly sequenced organisms

    Torres, M., Yang, H., Romero, A. E. & Paccanaro, A., 9 Dec 2021, In: Nature Machine Intelligence.

    Research output: Contribution to journalArticlepeer-review

  5. Published

    The influence of endophytes on rice fitness under environmental stresses

    Ganie, S., Bhat, J. A. & Devoto, A., 2 Dec 2021, In: Plant Molecular Biology.

    Research output: Contribution to journalArticlepeer-review

  6. E-pub ahead of print

    Seed-borne Cercospora beticola can initiate Cercospora leaf spot from sugar beet (Beta vulgaris L.) fruit tissue

    Spanner, R., Neubauer, J., Heick, T. M., Grusak, M. A., Hamilton, O., Rivera-Varas, V., de Jone, R., Pethybridge, S., Webb, K. M., Leubner-Metzger, G., Sector, G. A. & Bolton, M. D., 29 Nov 2021, (E-pub ahead of print) In: Phytopathology.

    Research output: Contribution to journalArticlepeer-review

  7. Forthcoming

    Cold-induced secondary dormancy and its regulatory mechanisms in Beta vulgaris

    Hourston, J., Steinbrecher, T., Chandler, J., Perez Suarez, M., Dietrich, K., Turečková, V., Tarkowska, D., Strnad, M., Weltmeier, F., Meinhard, J., Fischer, U., FiedlerWiechers, K., Ignatz, M. & Leubner, G., 18 Nov 2021, (Accepted/In press) In: Plant, Cell and Environment.

    Research output: Contribution to journalArticlepeer-review

  8. E-pub ahead of print

    Machine learning and network medicine approaches for drug repositioning for COVID-19

    de Siquiera Santos, S., Torres, M., Galeano Galeano, D., Sanchez, M. D. M., Cernuzzi, L. & Paccanaro, A., 9 Nov 2021, (E-pub ahead of print) In: Cell Patterns.

    Research output: Contribution to journalArticlepeer-review

  9. E-pub ahead of print

    Chloroplast development in green plant tissues: the interplay between light, hormone, and transcriptional regulation

    Cackett, L., Luginbuehl, L. H., Schreier, T. B., Lopez Juez, E. & Hibberd, J. M., 2 Nov 2021, (E-pub ahead of print) In: New Phytologist. 22, p. 151-167 17 p.

    Research output: Contribution to journalArticlepeer-review

  10. Published

    The esterification of xanthophylls in Solanum lycopersicum (tomato) chromoplasts; the role of a non-specific acyltransferase

    Lewis, E. R., Nogueira, M., Enfissi, G. & Fraser, P., Nov 2021, In: Phytochemistry. 191, 112912.

    Research output: Contribution to journalArticlepeer-review

  11. Published

    The evolution of plasmid transfer rate in bacteria and its effect on plasmid persistence

    Sheppard, R., Barraclough, T. & Jansen, V. A. A., 1 Oct 2021, In: American Naturalist. 198, 4, p. 473-488

    Research output: Contribution to journalArticlepeer-review

  12. Published

    Molecular mechanisms and hormonal regulation underpinning morphological dormancy: a case study using Apium graveolens (Apiaceae)

    Walker, M., Perez Suarez, M., Steinbrecher, T., Gawthrop, F., Pavlovic, I., Novak, O., Tarkowska, D., Strnad, M., Marone, F., Nakabayashi, K. & Leubner-Metzger, G., 27 Sep 2021, In: Plant Journal. 108, 4, p. 1020-1036 17 p.

    Research output: Contribution to journalArticlepeer-review

  13. E-pub ahead of print

    Metabolic changes in leaves of N. tabacum and N. benthamiana during plant development

    Drapal, M., Enfissi, G. & Fraser, P., 29 Jul 2021, (E-pub ahead of print) In: Journal of Plant Physiology. 153486.

    Research output: Contribution to journalArticle

  14. Published

    Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices

    Alseekh, S., Aharoni, A., Brotman, Y., Contrepois, K., D'Auria, J., Ewald, J., Ewald, J., Fraser, P., Giavalisco, P., Hall, R. D., Heinemann, M., Link, H., Luo, J., Neumann, S., Nielsen, J., Perez de Souza, L., Saito, K., Sauer, U., Schroeder, F. C., Schuster, S. & 12 others, Siuzdak, G., Skirycz, A., Sumner, L. W., Snyder, M. P., Tang, H., Tohge, T., Wang, Y., Wen, W., Wu, S., Xu, G., Zamboni, N. & Fernie, A. R., 8 Jul 2021, In: Nature Methods. 18, p. 747-756 10 p.

    Research output: Contribution to journalArticlepeer-review

  15. Published

    A tale of two morphs: developmental patterns and mechanisms of seed coat differentiation in the dimorphic diaspore model Aethionema arabicum (Brassicaceae)

    Arshad, W., Lenser, T., Wilhelmsson, P., Chandler, J., Steinbrecher, T., Marone, F., Perez Suarez, M., Collinson, M., Stuppy, W., Rensing, S., Theißen, G. & Leubner-Metzger, G., Jul 2021, In: Plant Journal. 107, 1, p. 166-181 16 p.

    Research output: Contribution to journalArticlepeer-review

  16. Published

    A transcriptomic, metabolomic and cellular approach to the physiological adaptation of tomato fruit to high temperature

    Almeida Barros da Silva, J., Perez, L. & Fraser, P., Jul 2021, In: Plant, Cell and Environment. 44, 7, p. 2211-2229

    Research output: Contribution to journalArticlepeer-review

  17. Published

    A domestication-associated gene, CsLH, encodes a phytochrome B protein that regulates hypocotyl elongation in cucumber.

    Liu, B., Weng, J., Guan, D., Zhang, Y., Niu, Q., Lopez Juez, E., Lai, Y., Garcia-Mas, J. & Huang, D., 16 Jun 2021, In: Molecular Horticulture. 1, 3.

    Research output: Contribution to journalArticlepeer-review

  18. Published

    Seed dormancy and weed emergence: from simulating environmental change to understanding trait plasticity, adaptive evolution, and population fitness

    Nakabayashi, K. & Leubner-Metzger, G., 28 May 2021, In: Journal of Experimental Botany. 72, 12, p. 4181-4185 5 p.

    Research output: Contribution to journalArticle

  19. Published

    Cellular and transcriptomic analyses reveal two-staged chloroplast biogenesis underpinning photosynthesis build-up in the wheat leaf

    Loudya, N., Mishra, P., Takahagi, K., Uehara-Yamaguchi, Y., Inoue, K., Bogre, L., Mochida, K. & Lopez Juez, E., 11 May 2021, In: Genome Biology. 22, 151.

    Research output: Contribution to journalArticlepeer-review

  20. Published

    Metabolic effects of agro-infiltration on N. benthamiana accessions

    Drapal, M., Enfissi, G. & Fraser, P., 28 Apr 2021, In: Transgenic Research.

    Research output: Contribution to journalArticle

  21. Published

    Aethionema arabicum genome annotation using PacBio full-length transcripts provides a valuable resource for seed dormancy and Brassicaceae evolution research

    Fernandez-Pozo, N., Metz, T., Chandler, J., Gramzow, L., Merai, Z., Maumus, F., Mittelsten Scheid, O., Theißen, G., Schranz, M. E., Leubner-Metzger, G. & Rensing, S., Apr 2021, In: Plant Journal. 106, 1, p. 275-293 19 p.

    Research output: Contribution to journalArticlepeer-review

  22. E-pub ahead of print

    New Plant Breeding Techniques and their regulatory implications: An opportunity to advance metabolomics approaches

    Enfissi, E., Drapal, M., Perez-Fons, L., Nogueira, M., Berry, H., Almeida, J. & Fraser, P., 6 Feb 2021, (E-pub ahead of print) In: Journal of Plant Physiology. 153378.

    Research output: Contribution to journalArticlepeer-review

  23. E-pub ahead of print

    Understanding colour retention in red chilli pepper fruit using a metabolite profiling approach

    Berry, H., Lai, F., Kende, A., Rickett, D., Baxter, C., Enfissi, E. & Fraser, P., 26 Jan 2021, (E-pub ahead of print) In: Food Chemistry. 100013.

    Research output: Contribution to journalArticlepeer-review

  24. Published
  25. 2020
  26. Submitted

    Integrated metabolite and gene expression profiling of the isoprenoid regulatory network in de-etiolated rice seedlings upon exposure to light

    Drapal, M. & Fraser, P., 10 Dec 2020, (Submitted) In: Physiologia Plantarum.

    Research output: Contribution to journalArticle

  27. Published

    Wayang sebagai Media Ekologi: Buku Pintar Kreativitas pada Masa Perubahan Iklim: Dampak Perubahan Iklim pada Tumbuhan dan Ekosistem di Indonesia: Ancaman dan Usulan Solusi.

    Devoto, A., 1 Dec 2020, Wayang sebagai Media Ekologi: Buku Pintar Kreativitas pada Masa Perubahan Iklim : Dampak Perubahan Iklim pada Tumbuhan dan Ekosistem di Indonesia: Ancaman dan Usulan Solusi. Jl. Ngadinegaran MJ III/ 100; Yogyakarta 55143, Indonesia, p. 17-21 5 p. 2

    Research output: Chapter in Book/Report/Conference proceedingChapter

  28. Published

    Characterisation of Thai strawberry (Fragaria × ananassa Duch.) cultivars with RAPD markers and metabolite profiling techniques

    Sirijan, M., Drapal, M., Chaiprasart, P. & Fraser, P., Dec 2020, In: Phytochemistry. 180, 112522.

    Research output: Contribution to journalArticlepeer-review

  29. Published

    The effect of β-cyclocitral treatment on the carotenoid content of transgenic Marsh grapefruit (Citrus paradisi Macf.) suspension-cultured cells

    Zheng, X., Zhu, K., Ye, J., Price, E., Deng, X. & Fraser, P., Dec 2020, In: Phytochemistry. 180, 8 p., 112509.

    Research output: Contribution to journalArticlepeer-review

  30. E-pub ahead of print

    Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group

    Research Data Alliance & Shanahan, H., 9 Nov 2020, (E-pub ahead of print) In: Wellcome Open Research. 267.

    Research output: Contribution to journalArticlepeer-review

  31. E-pub ahead of print

    Jasmonates induce Arabidopsis bioactivities selectively inhibiting the growth of breast cancer cells through CDC6 and mTOR

    Bomer, M., Perez-Salamo, I., Florance, H., Salmon, D., Dudenhoffer, J-H., Finch, P., Cinar, A., Smirnoff, N., Harvey, A. & Devoto, A., 29 Oct 2020, (E-pub ahead of print) In: New Phytologist. 229, 4, p. 2120-2134 15 p.

    Research output: Contribution to journalArticlepeer-review

  32. Published

    Inactivation of rice starch branching enzyme IIb triggers broad and unexpected changes in metabolism by transcriptional reprogramming

    Baysal, C., He, W., Drapal, M., Villorbina, G., Medina, V., Capell, T., Khush, G., Zhu, C., Fraser, P. & Christou, P., 20 Oct 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 42, p. 26503-26512 10 p.

    Research output: Contribution to journalArticlepeer-review

  33. E-pub ahead of print

    Coleorhiza-enforced seed dormancy: a novel mechanism to control germination in grasses

    Holloway, T., Steinbrecher, T., Perez, M., Seville, A., Stock, D., Nakabayashi, K. & Leubner-Metzger, G., 24 Sep 2020, (E-pub ahead of print) In: New Phytologist. 229, 4, p. 2179-2191 13 p.

    Research output: Contribution to journalArticlepeer-review

  34. Published

    Predicting the Frequencies of Drug Side effects

    Galeano, D., Li, S., Gerstein, M. & Paccanaro, A., 11 Sep 2020, In: Nature Communications. 11, p. 1-14 14 p., 4575.

    Research output: Contribution to journalArticlepeer-review

  35. Published

    Between a rock and a hard place: adaptive sensing and site-specific dispersal

    Nichols, B., Leubner-Metzger, G. & Jansen, V. A. A., Sep 2020, In: Ecology Letters. 23, 9, p. 1370-1379 10 p.

    Research output: Contribution to journalArticlepeer-review

  36. Published

    Assessment of metabolic variability and diversity present in leaf, peel and pulp tissue of diploid and triploid Musa spp.

    Drapal, M. & Fraser, P., Aug 2020, In: Phytochemistry. 176, p. 1-9 9 p., 112388.

    Research output: Contribution to journalArticlepeer-review

  37. Published

    RDA COVID-19 Recommendations and Guidelines on Data Sharing

    Research Data Alliance COVID-19 Working Group, 30 Jun 2020, 144 p.

    Research output: Book/ReportBook

  38. Published

    Retrograde signalling in a virescent mutant triggers an anterograde delay of chloroplast biogenesis that requires GUN1 and is essential for survival

    Loudya, N., Okunola, T., He, J., jarvis, P. & Lopez Juez, E., 22 Jun 2020, In: Philosophical Transactions of the Royal Society of London B: Biological Sciences. 375, 1801, p. 1-16 16 p., RSTB-2019-0400.R1.

    Research output: Contribution to journalArticlepeer-review

  39. Published

    Analysis of Tomato Post-Harvest Properties: Fruit Color, Shelf Life, and Fungal Susceptibility

    Thole, V., Vain, P., Yang, R. Y., Almeida Barros da Silva, J., Enfissi, E. M. A., Nogueira, M., Price, E. J., Alseekh, S., Fernie, A. R., Fraser, P. D., Hanson, P. & Martin, C., Jun 2020, In: Current protocols in plant biology. 5, 2, p. 1-17 17 p., e20108.

    Research output: Contribution to journalArticlepeer-review

  40. Published

    The Corrected Gene Proximity map for analyzing the 3D genome organization using Hi-C data

    Ye, C., Paccanaro, A., Gerstein, M. & Yan, K-K., 29 May 2020, In: BMC Bioinformatics. 21, p. 1-18 18 p., 222.

    Research output: Contribution to journalArticlepeer-review

  41. E-pub ahead of print

    Exploring the chemotypes underlying important agronomic and consumer traits in cassava (Manihot esculenta Crantz)

    Drapal, M. & Fraser, P., 26 May 2020, (E-pub ahead of print) In: Journal of Plant Physiology. 153206.

    Research output: Contribution to journalArticle

  42. Published

    The effects of high oxygen partial pressure on vegetable Allium seeds with a short shelf-life

    Hourston, J., Perez Suarez, M., Gawthrop, F., Richards, M., Steinbrecher, T. & Leubner, G., 16 May 2020, In: Planta. 251, p. 1-9 9 p., 105.

    Research output: Contribution to journalArticlepeer-review

  43. Published

    Transcription Factors FHY3 and FAR1 Regulate Light-induced CIRCADIAN CLOCK ASSOCIATED1 Gene Expression in Arabidopsis

    Liu, Y., Ma, M., Li, G., Yuan, L., Xie, Y., Wei, H., Ma, X., Li, Q., Devlin, P., Xu, X. & Wang, H., May 2020, In: Plant Cell. 32, 5, p. 1464-1478 15 p.

    Research output: Contribution to journalArticlepeer-review

  44. Published

    Rocket Science: The Effect of Spaceflight on Germination Physiology, Ageing, and Transcriptome of Eruca sativa Seeds

    Chandler, J., Haas, F., Khan, S., Bowden, L., Ignatz, M., Enfissi, G., Gawthrop, F., Griffiths, A., Fraser, P., Rensing, S. & Leubner, G., 24 Apr 2020, In: Life. 10, 4, p. 1-25 25 p., 49.

    Research output: Contribution to journalArticlepeer-review

  45. Published

    Network modeling of patients’ biomolecular profiles for clinical phenotype/outcome prediction

    Gliozzo, J., Perlasca, P., Mesiti, M., Casiraghi, E., Vallacchi, V., Vergani, E., Frasca, M., Grossi, G., Petrini, A., Re, M., Paccanaro, A. & Valentini, G., 27 Feb 2020, In: Scientific Reports. 10, p. 1-15 15 p., 3612.

    Research output: Contribution to journalArticlepeer-review

  46. E-pub ahead of print

    Cooking dependent loss of metabolites in potato breeding lines and their wild and landrace relatives

    Drapal, M. & Fraser, P., 1 Feb 2020, (E-pub ahead of print) In: Journal of Food Composition and Analysis. 103432.

    Research output: Contribution to journalArticlepeer-review

  47. E-pub ahead of print

    Helping the Consumers and Producers of Standards, Repositories and Policies to Enable FAIR Data

    McQuilton, P., Batista, D., Beyan, O., Granell, R., Coles, S., Izzo, M., Lister, A. L., Pergl, R., Rocca-Serra, P., Schaap, B., Shanahan, H., Thurston, M. & Sansone, S-A., 31 Jan 2020, (E-pub ahead of print) In: Data Intelligence. 2, 1-2, p. 151-157 7 p.

    Research output: Contribution to journalArticlepeer-review

  48. Published

    E2FB Interacts with RETINOBLASTOMA RELATED and Regulates Cell Proliferation during Leaf Development

    Őszi, E., Papdi, C., Mohammed, B., Petkó-Szandtner, A., Leviczky, T., Molnár, E., Galvan-Ampudia, C., Safina, K., Lopez Juez, E., Horvath, B., Bogre, L. & Magyar, Z., 6 Jan 2020, In: Plant physiology. 182, 1, p. 518-533 16 p.

    Research output: Contribution to journalArticlepeer-review

  49. Published

    Fracture of the dimorphic fruits of Aethionema arabicum (Brassicaceae)

    Arshad, W., Marone, F., Collinson, M., Leubner-Metzger, G. & Steinbrecher, T., Jan 2020, In: Botany. 98, p. 65-75 11 p.

    Research output: Contribution to journalArticlepeer-review

  50. 2019
  51. E-pub ahead of print

    Metabolite database for root, tuber and banana crops to facilitate modern breeding in understudied crops

    Price, E., Drapal, M., Perez, L. & Fraser, P., 17 Dec 2019, (E-pub ahead of print) In: Plant Journal. p. 1-11 11 p.

    Research output: Contribution to journalArticlepeer-review

  52. Published

    A metabolomics characterisation of natural variation in the resistance of cassava to whitefly

    Perez, L. & Fraser, P., 27 Nov 2019, In: BMC Biology. 19, p. 1-14 14 p., 518.

    Research output: Contribution to journalArticlepeer-review

  53. Published

    De novo transcriptome analysis of peduncle neckingin cut Rosa hybrida cultivar ‘H30’

    Lear, B., Marchbank, A., Kent, N., Tansey, K., Robert M. Andrews, Devlin, P., Rogers, H. J. & Stead, A., 20 Nov 2019, In: Acta Horticulturae.

    Research output: Contribution to journalArticlepeer-review

  54. Published

    The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

    Zhou, N., Bhat, P., Torres Bobadilla, M., Paccanaro, A., Yang, H. & Romero, A. E., 19 Nov 2019, In: Genome Biology. 20, p. 1-23 23 p., 244 (2019).

    Research output: Contribution to journalArticlepeer-review

  55. Published

    Naturally-primed life strategy plasticity of dimorphic Aethionema arabicum facilitates optimal habitat colonization

    Bhattacharya, S., Sperber, K., Özüdogru, B., Leubner-Metzger, G. & Mummenhoff, K., 6 Nov 2019, In: Scientific Reports. 9, p. 1-11 11 p., 16108.

    Research output: Contribution to journalArticlepeer-review

  56. E-pub ahead of print

    The subcellular localization of two isopentenyl diphosphate isomerases in rice suggests a role for the endoplasmic reticulum in isoprenoid biosynthesis

    Jin, X., Drapal, M. & Fraser, P., 2 Nov 2019, (E-pub ahead of print) In: Plant Cell Reports. p. 1-15 15 p.

    Research output: Contribution to journalArticlepeer-review

  57. Published
  58. Published

    The biochemistry underpinning industrial seed technology and mechanical processing of sugar beet

    Ignatz, M., Hourston, J., Turečková, V., Strnad, M., Meinhard, J., Fischer, U., Steinbrecher, T. & Leubner, G., Nov 2019, In: Planta. p. 1-13 13 p., PLAA-D-19-00588.

    Research output: Contribution to journalArticlepeer-review

  59. Published

    Single-tube, dual channel pentaplexing for the identification of Candida strains associated with human infection

    Jainlabdin, M. H., Batra, A., Sánchez Paredes, E., Hernández Hernández, F., Fu, G. & Tovar-Torres, J., 11 Oct 2019, In: Scientific Reports. 9, p. 1-14 14 p., 14692.

    Research output: Contribution to journalArticlepeer-review

  60. Published

    Stable cycling in quasi-linkage equilibrium: fluctuating dynamics under gene conversion and selection

    Russell, T. W., Russell, M. J., Úbeda, F. & Jansen, V. A. A., 21 Sep 2019, In: Journal of Theoretical Biology. 477, p. 84-95 12 p.

    Research output: Contribution to journalArticlepeer-review

  61. Published

    Circadian leaf movements facilitate overtopping of neighbors

    Woodley Of Menie, M., Pawlik, P., Webb, M., Bruce, K. & Devlin, P., Sep 2019, In: Progress in Biophysics and Molecular Biology. 146, p. 104-111 8 p.

    Research output: Contribution to journalArticlepeer-review

  62. Published

    Pericarp-mediated chemical dormancy controls the fruit germination of the invasive hoary cress (Lepidium draba), but not of hairy whitetop (Lepidium appelianum)

    Mohammed, S., Tureckova, V., Tarkowska, D., Strnad, M., Mummenhoff, K. & Leubner-Metzger, G., Sep 2019, In: Weed Science. p. 1-12 12 p., WS-D-19-00030.

    Research output: Contribution to journalArticlepeer-review

  63. Published

    Disease gene prediction for molecularly uncharacterized diseases

    Caceres, J. & Paccanaro, A., 5 Jul 2019, In: PLoS Computational Biology. 15, 7, p. 1-14 14 p., e1007078.

    Research output: Contribution to journalArticlepeer-review

  64. Published

    Aethionema arabicum: a novel model plant to study the light control of seed germination

    Merai, Z., Graeber, K., Wilhelmsson, P., Ullrich, K., Arshad, W., Grosche, C., Tarkowska, D., Tureckova, V., Strnad, M., Rensing, S., Leubner-Metzger, G. & Mittelsten Scheid, O., 1 Jun 2019, In: Journal of Experimental Botany. 70, 12, p. 3313-3328 16 p.

    Research output: Contribution to journalArticlepeer-review

  65. Published

    Metabolite Profiling: A Tool for the Biochemical Characterisation of Mycobacterium sp.

    Drapal, M. & Fraser, P., 25 May 2019, In: Microorganisms. 7, 5, p. 1-10 10 p., 148.

    Research output: Contribution to journalReview articlepeer-review

  66. Submitted

    Teaching FAIR

    Shanahan, H., 4 May 2019, (Submitted) In: Data Intelligence.

    Research output: Contribution to journalArticlepeer-review

  67. Published

    Carotenoid biosynthesis and sequestration in red chilli pepper and its impact on colour intensity traits

    Berry, H., Rickett, D., Baxter, C., Enfissi, E. & Fraser, P., 1 May 2019, In: Journal of Experimental Botany. 70, 10, p. 2637–2650 14 p.

    Research output: Contribution to journalArticlepeer-review

  68. Submitted

    9 Simple recommendations for teaching data skills

    Shanahan, H., 16 Apr 2019, (Submitted) In: Data Science Journal.

    Research output: Contribution to journalArticlepeer-review

  69. Published

    PRDM9 and the evolution of recombination hotspots

    Ubeda de Torres, F., Russell, T. & Jansen, V. A. A., Apr 2019, In: Theoretical Population Biology. 126, p. 19-32 14 p.

    Research output: Contribution to journalArticlepeer-review

  70. Published

    Metabolite profiling characterises chemotypes of Musa diploids and triploids at juvenile and pre-flowering growth stages

    Drapal, M., Barros de Carvalho, E., Rouard, M., Amah, D., Sardos, J., Van den Houwe, I., Brown, A., Roux, N., Swennen, R. & Fraser, P., 15 Mar 2019, In: Scientific Reports. 9, p. 1-10 10 p., 4657.

    Research output: Contribution to journalArticlepeer-review

  71. Published

    The MKK7-MPK6 MAP Kinase Module Is a Regulator of Meristem Quiescence or Active Growth in Arabidopsis

    Dóczi, R., Hatzimasoura, E., Farahi Bilooei, S., Ahmad, Z., Ditengou, F. A., Lopez Juez, E., Palme, K. & Bogre, L., 5 Mar 2019, In: Frontiers in Plant Science. 10, p. 1-11 11 p., 202.

    Research output: Contribution to journalArticlepeer-review

  72. Published

    Construction of a fusion enzyme for astaxanthin formation and its characterisation in microbial and plant hosts: A new tool for engineering ketocarotenoids

    Nogueira, M., Enfissi, E., Welsch, R., Beyer, P., Zurbriggen, M. D. & Fraser, P., Mar 2019, In: Metabolic engineering. 52, p. 243-252 10 p.

    Research output: Contribution to journalArticlepeer-review

  73. Published

    Dispersal biophysics and adaptive significance of dimorphic diaspores in the annual Aethionema arabicum (Brassicaceae)

    Arshad, W., Sperber, K., Steinbrecher, T., Nichols, B., Jansen, V. A. A., Leubner-Metzger, G. & Mummenhoff, K., Feb 2019, In: New Phytologist. 221, 3, p. 1434-1446 13 p.

    Research output: Contribution to journalArticlepeer-review

  74. Published

    Capturing Biochemical Diversity in Cassava (Manihot esculenta Crantz) through the Application of Metabolite Profiling

    Drapal, M., Barros de Carvalho, E., Ovalle Rivera, T. M., Becerra Lopez-Lavalle, L. A. & Fraser, P., 23 Jan 2019, In: Journal of Agricultural and Food Chemistry. 67, 3, p. 986–993 8 p.

    Research output: Contribution to journalArticlepeer-review

  75. E-pub ahead of print

    The road to astaxanthin production in tomato fruit reveals plastid and metabolic adaptation resulting in an unintended high lycopene genotype with delayed over-ripening properties

    Enfissi, E., Nogueira, M. & Fraser, P., 8 Jan 2019, (E-pub ahead of print) In: Plant biotechnology journal. p. 1-13 13 p.

    Research output: Contribution to journalArticlepeer-review

  76. Submitted

    Embedding Open Science practice into Data Science Training

    Shanahan, H., 1 Jan 2019, (Submitted).

    Research output: Contribution to conferencePosterpeer-review

  77. Published

    Metabolic diversity in sweet potato (Ipomoea Batatas, Lam.) leaves and storage roots

    Drapal, M. & Fraser, P., 1 Jan 2019, In: Horticulture Research. 6, p. 1-9 9 p., 2.

    Research output: Contribution to journalArticlepeer-review

  78. Forthcoming

    Learning interpretable disease self-representations for drug repositioning

    Galeano Galeano, D., Frasca, F., Gonzalez, G., Lapanogov, I., Veselkov, K., Paccanaro, A. & Bronstein, M. M., 2019, (Accepted/In press) Conference on Neural Information Processing Systems (NeurIPS) 2019: Graph representation Learning Workshop .

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  79. 2018
  80. Forthcoming

    An update on core jasmonate signalling networks, physiological scenarios and health applications

    Perez Salamo, I., Krasauskas, J., Gates, S., Diaz Sanchez, E. & Devoto, A., 31 Dec 2018, (Accepted/In press) In: Annual Plant Reviews Online. 2, p. 1-65 67 p., apr061.

    Research output: Contribution to journalReview articlepeer-review

  81. Published

    Transcriptomics: Quantifying Non-Uniform Read Distribution Using MapReduce

    Alnasir, J. & Shanahan, H., 27 Dec 2018, In: International Journal for the Foundations of Computer Science. 29, 8, 20 p.

    Research output: Contribution to journalArticlepeer-review

  82. Published

    COI1-dependent jasmonate signalling affects growth, metabolites production and cell wall protein composition in arabidopsis

    Bomer, M., O’Brien, J. A., Perez Salamo, I., Krasauskas, J., Finch, P., Briones Gomez, A., Daudi, A., Souda, P., Tsui, T., Whitelegge, J. P., Bolwell, P. & Devoto, A., 4 Dec 2018, In: Annals of Botany. 122, 7, p. 1117–1129 13 p.

    Research output: Contribution to journalArticlepeer-review

  83. E-pub ahead of print

    Characterisation of CRISPR mutants targeting genes modulating pectin degradation in ripening tomato

    Perez-Fons, L., Fraser, P. & Seymour, G. B., 20 Nov 2018, (E-pub ahead of print) In: Plant physiology. 179, 2, p. 544-557 14 p.

    Research output: Contribution to journalArticlepeer-review

  84. Published

    The application of Hadoop in structural bioinformatics

    Alnasir, J. & Shanahan, H., 20 Nov 2018, In: Briefings in Bioinformatics. p. 1-10 10 p., bby106.

    Research output: Contribution to journalArticlepeer-review

  85. Published

    Soil Inoculation with Bacillus spp. Modifies Root Endophytic Bacterial Diversity, Evenness, and Community Composition in a Context-Specific Manner

    Gadhave, K., Devlin, P., Ebertz, A., Ross, A. & Gange, A., Oct 2018, In: Microbial Ecology. 76, 3, p. 741-750 10 p.

    Research output: Contribution to journalArticlepeer-review

  86. Published

    Carotenoid profiling of yams: Clarity, comparisons and diversity

    Price, E. & Fraser, P., 1 Sep 2018, In: Food Chemistry. 259, p. 130-138 9 p.

    Research output: Contribution to journalArticlepeer-review

  87. Published

    Long-term persistence of agricultural pest insects by risk-spreading dispersal

    Gavina, M. K. A., Aoki, K., Ichinose, G., Rabajante, J. F., Ito, H., Morita, S., Jansen, V. A. A. & Yoshimura, J., Sep 2018, In: ECOLOGICAL RESEARCH. 33, 5, p. 1031-1037 7 p.

    Research output: Contribution to journalArticlepeer-review

  88. Published

    The assessment of changes to the nontuberculous mycobacteria metabolome in response to anti-TB drugs

    Drapal, M., Wheeler, P. R. & Fraser, P., Aug 2018, In: FEMS Microbiology Letters. 365, 15, p. 1-9 9 p., fny153.

    Research output: Contribution to journalArticlepeer-review

  89. Published

    Tissue and cellular mechanics of seeds

    Steinbrecher, T. & Leubner-Metzger, G., Aug 2018, In: Current Opinion in Genetics & Development. 51, p. 1-10 10 p.

    Research output: Contribution to journalArticlepeer-review

  90. Published

    Systems Metagenomics

    Shanahan, H. & Radwan, G., 15 Jul 2018.

    Research output: Contribution to conferencePosterpeer-review

  91. Published

    Subclonal mutation selection in mouse lymphomagenesis identifies known cancer loci and suggests novel candidates

    Webster, P., Dawes, J., Dewchand, H., Takacs, K., Iadarola, B., Bolt, B., Caceres Silva, J., Kaczor, J., Dharmalingam, G., Dore, M., Game, L., Adejumo, T., Elliott, J., Naresh, K., Karimi, M., Rekopoulou, K., Tan, G., Paccanaro, A. & Uren, A., 9 Jul 2018, In: Nature Communications. 9, p. 1-14 14 p., 2649.

    Research output: Contribution to journalArticlepeer-review

  92. Published

    Systems Metagenomics: Profiling short-read microbiome data using population-based k-mer identification

    Shanahan, H. & Radwan, G., 6 Jul 2018.

    Research output: Contribution to conferencePosterpeer-review

  93. Published
  94. Published

    Detection and Enhancement of Ketocarotenoid Accumulation in the Newly Isolated Sarcinoid Green Microalga Chlorosarcinopsis PY02

    Cherdchukeattisak, P., Fraser, P., Purton, S. & Wannathong Brocklehurst, T., 12 Feb 2018, In: Open biology. 7, 1, p. 1-14 14 p., 17.

    Research output: Contribution to journalArticlepeer-review

  95. E-pub ahead of print

    Converging Light, Energy and Hormonal Signaling Control Meristem Activity, Leaf Initiation, and Growth

    Mohammed, B., Farahi Bilooei, S., Dóczi, R., Grove, E., Railo, S., Palme, K., Ditengou, F. A., Bogre, L. & Lopez-Juez, E., 6 Feb 2018, (E-pub ahead of print) In: Plant physiology. 176, 2, p. 1365-1381 17 p.

    Research output: Contribution to journalArticlepeer-review

  96. Published

    Creating plant molecular factories for industrial and nutritional isoprenoid production

    Nogueira, M., Enfissi, E., Almeida Barros da Silva, J. & Fraser, P., Feb 2018, In: Current Opinion in Biotechnology. 49, p. 80-87 8 p.

    Research output: Contribution to journalArticlepeer-review

  97. Published

    How humans transmit language: horizontal transmission matches word frequencies among peers on Twitter

    Bryden, J., Wright, S. P. & Jansen, V. A. A., Feb 2018, In: Journal of the Royal Society. Interface. 15, 139, p. 1-6 6 p., 20170738.

    Research output: Contribution to journalArticlepeer-review

  98. Published

    Coevolving MAPK and PID phosphosites indicate an ancient environmental control of PIN auxin transporters in land plants

    Dory, M., Hatzimasoura, E., Kállai, B. M., Nagy, S. K., Jäger, K., Darula, Z., Nádai, T. V., Mészáros, T., Lopez Juez, E., Barnabás, B., Palme, K., Bogre, L., Ditengou, F. A. & Dóczi, R., Jan 2018, In: FEBS Letters. 592, 1, p. 89-102 14 p.

    Research output: Contribution to journalLetterpeer-review

  99. Published

    Finite indentation of highly curved elastic shells

    Pearce, S., King, J., Steinbrecher, T., Leubner-Metzger, G., Everitt, N. & Holdsworth, M., Jan 2018, In: Proceedings of the Royal Society A: Mathematical, Physical & Engineering Sciences. 474, 2209, p. 1-18 18 p.

    Research output: Contribution to journalArticlepeer-review

  100. Submitted

    “Ethics When You Least Expect It”: A Modular Approach to Data Ethics Instruction

    Shanahan, H., Bezuidenhout, L. & Quick, R., 2018, (Submitted).

    Research output: Contribution to conferencePaperpeer-review

  101. Published

    A Recommender System Approach for Predicting Drug Side Effects

    Galeano Galeano, D. & Paccanaro, A., 2018, IJCNN 2018: International Joint Conference on Neural Networks. IEEE Xplore, p. 1-7 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  102. Published

    What causes peduncle necking in cut Rosa hybrida? Transcriptome analysis of rose stem tissue and analysis of microbial load

    Lear, B., Marchbank, A., Kent, N., Tansey, K., Andrews, R., Wheeler, T., Crompton, R., Devlin, P., Rogers, H. J. & Stead, A., 2018, In: Acta Horticulturae.

    Research output: Contribution to journalMeeting abstractpeer-review

  103. 2017
  104. Published

    Drug cocktail selection for the treatment of chagas disease: A multi-objective approach

    Torres Bobadilla, M., Caceres Silva, J., Jimenez, R., Yubero, V., Vega, C., Rolón, M., Cernuzzi, L., Barán, B. & Paccanaro, A., 21 Dec 2017, SLIOIA - Simposio Latinoamericano de Investigación de Operaciones e Inteligencia Artificial 2017. p. 1-5 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  105. Published

    Fruit fracture biomechanics and the release of Lepidium didymum pericarp-imposed mechanical dormancy by fungi

    Sperber, K., Steinbrecher, T., Graeber, K., Scherer, G., Clausing, S., Wiegand, N., Hourston, J., Kurre, R., Leubner-Metzger, G. & Mummenhoff, K., 30 Nov 2017, In: Nature Communications. 8, p. 1-11 11 p., 1868.

    Research output: Contribution to journalArticlepeer-review

  106. Published

    Neurogenomic Signatures of Successes and Failures in Life-History Transitions in a Key Insect Pollinator

    Manfredini, F., Romero Lopez, A., Pedroso Rovira, I., Paccanaro, A., Sumner, S. & Brown, M., 1 Nov 2017, In: Genome Biology and Evolution. 9, 11, p. 3059-3072 14 p.

    Research output: Contribution to journalArticlepeer-review

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