1. Submitted

    “Ethics When You Least Expect It”: A Modular Approach to Data Ethics Instruction

    Shanahan, H., Bezuidenhout, L. & Quick, R., 2018, (Submitted).

    Research output: Contribution to conferencePaperpeer-review

  2. Published

    12 paragraphs

    Solovyev, V., 1994, Computer analysis of Genetic Macromolecules. Structure, Function and Evolution. Kolchanov, N. A. & Lim, H. A. (eds.). World Scientific

    Research output: Chapter in Book/Report/Conference proceedingChapter

  3. Published

    3D-structure calculations of a-helical domains of protein molecules using the quasispherical primary approximations

    Solovyev, V., Salikhova, A. K., Lim, H. A. & Witten, M., 1992, Biomedical Modeling and Simulation. Eisenfeld, J. & Levin, D. (eds.). Elsevier Science Publishers B.V. (North-Holland), p. 201-211

    Research output: Chapter in Book/Report/Conference proceedingChapter

  4. Submitted

    9 Simple recommendations for teaching data skills

    Shanahan, H., 16 Apr 2019, (Submitted) In: Data Science Journal.

    Research output: Contribution to journalArticlepeer-review

  5. Published

    A Census of Human Soluble Protein Complexes

    Havugimana, P. C., Hart, G. T., Nepusz, T., Yang, H., Turinsky, A. L., Li, Z., Wang, P. I., Boutz, D. R., Fong, V., Phanse, S., Babu, M., Craig, S. A., Hu, P., Wan, C., Vlasblom, J., Dar, V-N., Bezginov, A., Clark, G. W., Wu, G. C., Wodak, S. J. & 4 others, Tillier, E. R. M., Paccanaro, A., Marcotte, E. M. & Emili, A., 31 Aug 2012, In: Cell. 150, 5, p. 1068–1081

    Research output: Contribution to journalArticlepeer-review

  6. Published

    A Comparison of Venn Machine with Platt's Method in Probabilistic Outputs

    Zhou, C., Nouretdinov, I., Luo, Z., Adamskiy, M., Coldham, N. & Gammerman, A., 2011, 12th INNS EANN-SIG International Conference, EANN 2011 and 7th IFIP WG 12.5 International Conference, Artificial Intelligence Applications and Innovations 2011, Corfu, Greece, September 15-18, 2011, Proceedings , Part II. . p. 483-

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  7. Published

    A high quality draft consensus sequence of the genome of a heterozygous grapevine variety

    Velasco, R., Zharkikh, A., Troggio, M., Cartwright, D. A., Cestaro, A., Pruss, D., Pindo, M., Fitzgerald, L. M., Vezzulli, S., Reid, J., Malacarne, G., Iliev, D., Coppola, G., Wardell, B., Micheletti, D., Macalma, T., Facci, M., Mitchell, J. T., Perazzolli, M., Eldredge, G. & 37 others, Gatto, P., Oyzerski, R., Moretto, M., Gutin, N., Stefanini, M., Chen, Y., Segala, C., Davenport, C., Demattè, L., Mraz, A., Battilana, J., Stormo, K., Costa, F., Tao, Q., Si-Ammour, A., Harkins, T., Lackey, A., Perbost, C., Taillon, B., Stella, A., Solovyev, V., Fawcett, J. A., Sterck, L., Vandepoele, K., Grando, S. M., Toppo, S., Moser, C., Lanchbury, J., Bogden, R., Skolnick, M., Sgaramella, V., Bhatnagar, S. K., Fontana, P., Gutin, A., Van de Peer, Y., Salamini, F. & Viola, R., 2007, In: PLoS ONE. 2, 12, p. e1326

    Research output: Contribution to journalArticlepeer-review

  8. Published

    A large-scale evaluation of computational protein function prediction

    Radivojac, P., Clark, W. T., Oron, T. R., Schnoes, A. M., Wittkop, T., Sokolov, A., Graim, K., Funk, C., Verspoor, K., Ben-Hur, A., Pandey, G., Yunes, J. M., Talwalkar, A. S., Repo, S., Souza, M. L., Piovesan, D., Casadio, R., Wang, Z., Cheng, J., Fang, H. & 82 others, Gough, J., Koskinen, P., Törönen, P., Nokso-Koivisto, J., Holm, L., Cozzetto, D., Buchan, D. W. A., Bryson, K., Jones, D. T., Limaye, B., Inamdar, H., Datta, A., Manjari, S. K., Joshi, R., Chitale, M., Kihara, D., Lisewski, A. M., Erdin, S., Venner, E., Lichtarge, O., Rentzsch, R., Yang, H., Romero, A. E., Bhat, P., Paccanaro, A., Hamp, T., Kaßner, R., Seemayer, S., Vicedo, E., Schaefer, C., Achten, D., Auer, F., Boehm, A., Braun, T., Hecht, M., Heron, M., Hönigschmid, P., Hopf, T. A., Kaufmann, S., Kiening, M., Krompass, D., Landerer, C., Mahlich, Y., Roos, M., Björne, J., Salakoski, T., Wong, A., Shatkay, H., Gatzmann, F., Sommer, I., Wass, M. N., Sternberg, M. J. E., Škunca, N., Supek, F., Bošnjak, M., Panov, P., Džeroski, S., Šmuc, T., Kourmpetis, Y. A. I., van Dijk, A. D. J., ter Braak, C. J. F., Zhou, Y., Gong, Q., Dong, X., Tian, W., Falda, M., Fontana, P., Lavezzo, E., Di Camillo, B., Toppo, S., Lan, L., Djuric, N., Guo, Y., Vucetic, S., Bairoch, A., Linial, M., Babbitt, P. C., Brenner, S. E., Orengo, C., Rost, B., Mooney, S. D. & Friedberg, I., Mar 2013, In: Nature Methods. 10, 3, p. 221-7 7 p.

    Research output: Contribution to journalArticlepeer-review

  9. Published
  10. E-pub ahead of print

    A network medicine approach to quantify distance between hereditary disease modules on the interactome

    Caniza, H., Romero, A. E. & Paccanaro, A., 3 Dec 2015, In: Scientific Reports. 5, p. 1-10 10 p., 17658.

    Research output: Contribution to journalArticlepeer-review

  11. Published

    A new approach for the classification of functional regions of DNA sequences based on fractal representation

    Solovyev, V., Korolev, S. V. & Lim, H. A., 1993, In: Int.J. Genomic. Res.. 1, 2, p. 108-127

    Research output: Contribution to journalArticlepeer-review

  12. Published

    A non-perturbative calculation of the mass of the B-c

    Shanahan, H. P., Boyle, P., Davies, C. T. H., Newton, H. & UKQCD Collaboration, 6 May 1999, In: Physics Letters B. 453, 3-4, p. 289-294 6 p.

    Research output: Contribution to journalArticlepeer-review

  13. Published

    A novel high-throughput in vivo molecular screen for shade avoidance mutants identifies a novel phyA mutation

    Wang, X., Roig-Villanova, I., Khan, S., Shanahan, H., Quail, P. H., Martinez-Garcia, J. F. & Devlin, P. F., 2011, In: Journal of Experimental Botany. 62, 8, p. 2973-2987 15 p.

    Research output: Contribution to journalArticlepeer-review

  14. Published

    A novel method of protein sequence classification based on oligopeptide frequency analysis and its application to search for functional sites and to domain localization

    Solovyev, V. V. & Makarova, K. S., 1 Feb 1993, In: Bioinformatics. 9, 1, p. 17-24 8 p.

    Research output: Contribution to journalArticlepeer-review

  15. Published

    A Novel Method to Detect Bias in Short Read NGS Data

    Alnasir, J. & Shanahan, H., 2017, In: Journal of Integrative Bioinformatics. 14, 3, p. 1-9 9 p.

    Research output: Contribution to journalArticlepeer-review

  16. Published

    A novel type of RNase III family proteins in eukaryotes

    Filippov, V., Solovyev, V., Filippova, M. & Gill, S. S., 7 Mar 2000, In: Gene. 245, 1, p. 213-21 9 p.

    Research output: Contribution to journalArticlepeer-review

  17. Published

    A Recommender System Approach for Predicting Drug Side Effects

    Galeano Galeano, D. & Paccanaro, A., 2018, IJCNN 2018: International Joint Conference on Neural Networks. IEEE Xplore, p. 1-7 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  18. Published
  19. Published

    A stochastic simulation system and its application to causal models

    Luo, Z. & Gammerman, A., 1990, Proceeding of 3rd International Conference on IPMU in Knowledge-Based Systems. p. 186-189

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  20. Published

    A study of the quenched (b)over-bar-c mass spectrum at beta=6.2

    Davies, C. T. H., Lidsey, A. J. & Shanahan, H. P., Apr 1998, In: Nuclear Physics B - Proceedings Supplements. 63, p. 323-325 3 p.

    Research output: Contribution to journalArticlepeer-review

  21. Published

    Ab initio gene finding in Drosophila genomic DNA

    Salamov, A. A. & Solovyev, V. V., Apr 2000, In: Genome Research. 10, 4, p. 516-522 7 p.

    Research output: Contribution to journalArticlepeer-review

  22. Published

    Abundance of plastid DNA insertions in nuclear genomes of rice and Arabidopsis

    Shahmuradov, I. A., Akbarova, Y. Y., Solovyev, V. V. & Aliyev, J. A., Jul 2003, In: Plant Molecular Biology. 52, 5, p. 923-934 12 p.

    Research output: Contribution to journalArticlepeer-review

  23. Published

    Alexey Chervonenkis's Bibliography: Introductory Comments

    Gammerman, A. & Vovk, V., Sep 2015, In: Journal of Machine Learning Research. 16, p. 2051-2066 16 p.

    Research output: Contribution to journalEditorial

  24. Published

    Alexey Chervonenkis's Bibliography

    Gammerman, A. & Vovk, V., Sep 2015, In: Journal of Machine Learning Research. 16, p. 2067-2080 14 p.

    Research output: Contribution to journalEditorial

  25. Published

    Algorithmic Learning in a Random World

    Vovk, V., Gammerman, A. & Shafer, G., 2005, Springer.

    Research output: Book/ReportBook

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