1. Published

    Feature Selection

    Bellotti, T., Nouretdinov, I., Yang, M. & Gammerman, A., 2014, Conformal Prediction for Reliable Machine Learning: Theory, Adaptations and Applications. Balasubramanian, V., Ho, S-S. & Vovk, V. (eds.). Elsevier, p. 115-130 16 p. 6

    Research output: Chapter in Book/Report/Conference proceedingChapter

  2. Published

    Feature Selection by Conformal Predictor

    Yang, M., Nouretdinov, I., Luo, Z. & Gammerman, A., 2011, 12th INNS EANN-SIG International Conference, EANN 2011 and 7th IFIP WG 12.5 International Conference, Artificial Intelligence Applications and Innovations 2011, Corfu, Greece, September 15-18, 2011, Proceedings, Part II. . p. 449-

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  3. Published

    Feeder-Level Deep Learning-based Photovoltaic Penetration Estimation Scheme

    Zhang, X., Kuenzel, S. & Watkins, C., 13 Oct 2020.

    Research output: Contribution to conferencePaperpeer-review

  4. Published

    Finding genes by computer: probabilistic and discriminative approaches

    Solovyev, V., 2002, Current Topics in Computational Biology. Jiang, T., Smith, T., Xu, Y. & Zhang, M. (eds.). MIT Press, p. 365-401

    Research output: Chapter in Book/Report/Conference proceedingChapter

  5. Published

    First International Conference on Bioinformatics of Genome Regulation and Structure 1998

    Kolchanov, N. A. & Solovyev, V. V., 1999, In: Bioinformatics. 15, 7-8, p. 527-527 1 p.

    Research output: Contribution to journalEditorialpeer-review

  6. Published

    FORM-FACTORS FOR B-]PI-L(V)OVER-BAR(L) AND B-]K-ASTERISK-GAMMA DECAYS ON THE LATTICE

    BURFORD, D. R., DUONG, H. D., FLYNN, J. M., GOUGH, B. J., HAZEL, N. M., NIEVES, J. & SHANAHAN, H. P., 7 Aug 1995, In: Nuclear Physics B. 447, 2-3, p. 425-437 13 p.

    Research output: Contribution to journalArticlepeer-review

  7. E-pub ahead of print

    Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group

    Research Data Alliance & Shanahan, H., 9 Nov 2020, In: Wellcome Open Research. 267.

    Research output: Contribution to journalArticlepeer-review

  8. Published

    Fractal graphical representation and analysis of DNA and protein sequences: Computational Molecular Biology

    Solovyev, V. V., 1993, In: BioSystems. 30, 1-3, p. 137-160 24 p.

    Research output: Contribution to journalArticlepeer-review

  9. Published

    Full QCD light hadron spectrum and quark masses: Final results from CP-PACS

    Khan, A. A., Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K. I., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP PACS Collaboration, Mar 2001, In: Nuclear Physics B - Proceedings Supplements. 94, p. 229-232 4 p.

    Research output: Contribution to journalArticlepeer-review

  10. Published

    Full QCD light hadron spectrum from the CP-PACS

    Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, Mar 1999, In: Nuclear Physics B - Proceedings Supplements. 73, p. 192-194 3 p.

    Research output: Contribution to journalArticlepeer-review

  11. Published

    Functional and evolutionary insights from the genomes of three parasitoid Nasonia species

    Werren, J. H., Richards, S., Desjardins, C. A., Niehuis, O., Gadau, J., Colbourne, J. K., Werren, J. H., Richards, S., Desjardins, C. A., Niehuis, O., Gadau, J., Colbourne, J. K., Beukeboom, L. W., Desplan, C., Elsik, C. G., Grimmelikhuijzen, C. J. P., Kitts, P., Lynch, J. A., Murphy, T., Oliveira, D. C. S. G. & 31 others, Smith, C. D., van de Zande, L., Worley, K. C., Zdobnov, E. M., Aerts, M., Albert, S., Anaya, V. H., Anzola, J. M., Barchuk, A. R., Behura, S. K., Bera, A. N., Berenbaum, M. R., Bertossa, R. C., Bitondi, M. M. G., Bordenstein, S. R., Bork, P., Bornberg-Bauer, E., Brunain, M., Cazzamali, G., Chaboub, L., Chacko, J., Chavez, D., Childers, C. P., Choi, J-H., Clark, M. E., Claudianos, C., Clinton, R. A., Cree, A. G., Cristino, A. S., Solovyev, V. & Nasonia Genome Working Group, 15 Jan 2010, In: Science. 327, 5963, p. 343-8 6 p.

    Research output: Contribution to journalArticlepeer-review

  12. Published

    Genome sequence of the pea aphid Acyrthosiphon pisum

    Solovyev, V. & International Aphid Genomics Consortium, 2010, In: PLoS Biology. 8, 2, p. e1000313

    Research output: Contribution to journalArticlepeer-review

  13. Published

    Genomic organization, evolution, and structural peculiarities of highly repetitive DNA of Hordeum vulgare

    Vershinin, A. V., Salina, E. A., Solovyev, V. & Timofeyeva, L. L., 1990, In: Genome. 33, p. 441-449

    Research output: Contribution to journalArticlepeer-review

  14. Published

    GFam: a platform for automatic annotation of gene families

    Sasidharan, R., Nepusz, T., Swarbreck, D., Huala, E. & Paccanaro, A., 2012, In: Nucleic Acids Research. 40, 19, 15 p., e152.

    Research output: Contribution to journalArticlepeer-review

  15. Published

    Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins

    Hu, P., Janga, S. C., Babu, M., Díaz-Mejía, J. J., Butland, G., Yang, W., Pogoutse, O., Guo, X., Phanse, S., Wong, P., Chandran, S., Christopoulos, C., Nazarians-Armavil, A., Nasseri, N. K., Musso, G., Ali, M., Nazemof, N., Eroukova, V., Golshani, A., Paccanaro, A. & 3 others, Greenblatt, J. F., Moreno-Hagelsieb, G. & Emili, A., 2009, In: PLoS Biology. 7, 4, p. e96

    Research output: Contribution to journalArticlepeer-review

  16. Published

    Health Advice from Internet Discussion Forums: How Bad is Dangerous?

    Cole, J., Watkins, C. & Kleine, D., 6 Jan 2016, In: Journal of Medical Internet Research. 18, 1, p. 1-15 15 p., e4.

    Research output: Contribution to journalArticlepeer-review

  17. Published

    Heavy hybrid states from NRQCD

    Manke, T., Drummond, I. T., Horgan, R. R. & Shanahan, H. P., 1 Apr 1998, In: Physical Review D . 57, 7, p. R3829-R3832 4 p.

    Research output: Contribution to journalArticlepeer-review

  18. Published

    Heavy quark physics in N-f=2 QCD

    Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, Mar 1999, In: Nuclear Physics B - Proceedings Supplements. 73, p. 375-377 3 p.

    Research output: Contribution to journalArticlepeer-review

  19. Published

    Heavy quarkonia from anisotropic and isotropic lattices

    Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP PACS Collaboration, Apr 2000, In: Nuclear Physics B - Proceedings Supplements. 83-4, p. 319-321 3 p.

    Research output: Contribution to journalArticlepeer-review

  20. Published

    Heavy-light decay constants from clover heavy quark action in QCD with two flavors of dynamical quarks

    Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP PACS Collaboration, Apr 2000, In: Nuclear Physics B - Proceedings Supplements. 83-4, p. 331-333 3 p.

    Research output: Contribution to journalArticlepeer-review

  21. Published

    Heavy-light decay constants from relativistic N-f=2, 0 QCD

    Shanahan, H. P. & CP-PACS Collaboration, 2000, HIGH ENERGY PHYSICS 99, PROCEEDINGS. BRISTOL: IOP PUBLISHING LTD, p. 943-944 2 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  22. Published

    Heavy-light spectrum and decay constant from NRQCD with two flavors of dynamical quarks

    Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP PACS Collaboration, Apr 2000, In: Nuclear Physics B - Proceedings Supplements. 83-4, p. 265-267 3 p.

    Research output: Contribution to journalArticlepeer-review

  23. Published

    Hedging predictions in machine learning - The second Computer Journal Lecture

    Gammerman, A. & Vovk, V., Mar 2007, In: The Computer Journal. 50, 2, p. 151-163 13 p.

    Research output: Contribution to journalArticlepeer-review

  24. E-pub ahead of print

    Helping the Consumers and Producers of Standards, Repositories and Policies to Enable FAIR Data

    McQuilton, P., Batista, D., Beyan, O., Granell, R., Coles, S., Izzo, M., Lister, A. L., Pergl, R., Rocca-Serra, P., Schaap, B., Shanahan, H., Thurston, M. & Sansone, S-A., 31 Jan 2020, In: Data Intelligence. 2, 1-2, p. 151-157 7 p.

    Research output: Contribution to journalArticlepeer-review

  25. Published

    HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix structural motif

    Ferrer-Costa, C., Shanahan, H. P., Jones, S. & Thornton, J. M., 15 Sep 2005, In: Bioinformatics. 21, 18, p. 3679-3680 2 p.

    Research output: Contribution to journalArticlepeer-review

  26. Published

    Hybrid quarkonia on asymmetric lattices

    Manke, T., Shanahan, H. P., Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K., Okawa, M., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, 31 May 1999, In: Physical Review Letters. 82, 22, p. 4396-4399 4 p.

    Research output: Contribution to journalArticlepeer-review

  27. Published

    Hybrid quarkonia with dynamical sea quarks

    Manke, T., Khan, A. A., Aoki, S., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, 1 Nov 2001, In: Physical Review D . 6409, 9, p. - 4 p.

    Research output: Contribution to journalArticlepeer-review

  28. Published

    Hybrid quarkonia with high statistics from NRQCD

    Manke, T., Drummond, I. T., Horgan, R. R., Shanahan, H. P. & UKQCD Collaboration, Apr 1998, In: Nuclear Physics B - Proceedings Supplements. 63, p. 332-334 3 p.

    Research output: Contribution to journalArticlepeer-review

  29. Published

    Hypergraphical Conformal Predictors

    Fedorova, V., Gammerman, A., Nouretdinov, I. & Vovk, V., 21 Dec 2015, In: International Journal on Artificial Intelligence Tools. 24, 6, 1560003.

    Research output: Contribution to journalArticlepeer-review

  30. Published

    Identification of human gene functional regions based on oligonucleotide composition

    Solovyev, V. V. & Lawrence, C. B., 1 Jan 1993, In: Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology. 1, p. 371-9 9 p.

    Research output: Contribution to journalArticlepeer-review

  31. Published

    Identification of human gene structure using linear discriminant functions and dynamic programming

    Solovyev, V. V., Salamov, A. A. & Lawrence, C. B., 1 Jan 1995, In: Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology. 3, p. 367-75 9 p.

    Research output: Contribution to journalArticlepeer-review

  32. Published

    Identifying DNA-binding proteins using structural motifs and the electrostatic potential

    Shanahan, H. P., Garcia, M. A., Jones, S. & Thornton, J. M., 2004, In: Nucleic Acids Research. 32, 16, p. 4732-4741 10 p.

    Research output: Contribution to journalArticlepeer-review

  33. E-pub ahead of print

    Immune tolerance maintained by cooperative interactions between T cells and antigen presenting cells shapes a diverse TCR repertoire

    Best, K., Chain, B. & Watkins, C., 7 Aug 2015, In: Frontiers in Immunology. 6, p. 1-14 14 p., 360.

    Research output: Contribution to journalArticlepeer-review

  34. Published

    Improving GO semantic similarity measures by exploring the ontology beneath the terms and modelling uncertainty

    Yang, H., Nepusz, T. & Paccanaro, A., 2012, In: Bioinformatics. 28, 10, p. 1383-1389 7 p.

    Research output: Contribution to journalArticlepeer-review

  35. Published

    Inductive Confidence Machine for pattern recognition

    Surkov, D., Gammerman, A. & Vovk, V., 2002, Proceedings of the ICDM 2002 Workshop on the Foundation of Data Mining and Knowledge Discovery. Lin, T. & Ohsuga, S. (eds.). Shimane Medical University, p. 249-255 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  36. Published

    Inductive Conformal Martingales for Change-Point Detection

    Volkhonskiy, D., Burnaev, E., Nouretdinov, I., Gammerman, A. & Vovk, V., 2017, 6th Symposium on Conformal and Probabilistic Prediction with Applications (COPA 2017). p. 1-22 22 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  37. Published

    Inferring protein-protein interactions using interaction network topologies

    Paccanaro, A., Trifonov, V., Yu, H. & Gerstein, M. B., 2005, Proceedings of the International Joint Conference on Neural Networks. p. 161 166 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  38. Published

    INFOGENE: a database of known gene structures and predicted genes and proteins in sequences of genome sequencing projects

    Solovyev, V. V. & Salamov, A. A., 1 Jan 1999, In: Nucleic Acids Research. 27, 1, p. 248-250 3 p.

    Research output: Contribution to journalArticlepeer-review

  39. Published

    Insights into social insects from the genome of the honeybee Apis mellifera

    Solovyev, V. & Honeybee Genome Sequencing Consortium, 26 Oct 2006, In: Nature. 443, 7114, p. 931-49 19 p.

    Research output: Contribution to journalArticlepeer-review

  40. Published

    Integrated databases and computer systems for studying eukaryotic gene expression

    Kolchanov, N. A., Ponomarenko, M. P., Frolov, A. S., Ananko, E. A., Kolpakov, F. A., Ignatieva, E. V., Podkolodnaya, O. A., Goryachkovskaya, T. N., Stepanenko, I. L., Merkulova, T. I., Babenko, V. V., Ponomarenko, Y. V., Kochetov, A. V., Podkolodny, N. L., Vorobiev, D. V., Lavryushev, S. V., Grigorovich, D. A., Kondrakhin, Y. V., Milanesi, L., Wingender, E. & 2 others, Solovyev, V. & Overton, G. C., 1999, In: Bioinformatics. 15, 7-8, p. 669-86 18 p.

    Research output: Contribution to journalArticlepeer-review

  41. Published

    Integration of curated databases to identify genotype-phenotype associations

    Goh, C-S., Gianoulis, T. A., Liu, Y., Li, J., Paccanaro, A., Lussier, Y. A. & Gerstein, M., 2006, In: BMC Genomics. 7, p. 257

    Research output: Contribution to journalArticlepeer-review

  42. Published

    International employees’ concerns during serious disease outbreaks and the potential impact on business continuity: Lessons identified from the 2014–15 West African Ebola outbreak

    Cole, J. & Watkins, C., 1 Dec 2015, In: Journal of Business Continuity and Emergency Planning. 9, 2, p. 149-162 14 p.

    Research output: Contribution to journalArticlepeer-review

  43. Published

    Internet discussion forums: Maximizing choice in health-seeking behaviour during public health emergencies

    Cole, J., Kleine, D. & Watkins, C., 13 Jun 2016, 2016 International Conference On Cyber Situational Awareness, Data Analytics And Assessment (CyberSA). Onwubiko, C. (ed.). London: IEEE, p. 99 104 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  44. Published

    Investigation into the annotation of protocol sequencing steps in the sequence read archive

    Alnasir, J. & Shanahan, H., Dec 2015, In: GigaScience. 4, 1, p. 1-11 11 p.

    Research output: Contribution to journalArticlepeer-review

  45. Published

    Jasmonate controls leaf growth by repressing cell proliferation and the onset of endoreduplication while maintaining a potential stand-by mode

    Noir, S., Bömer, M., Takahashi, N., Ishida, T., Tsui, T-L., Balbi, V., Shanahan, H., Sugimoto, K. & Devoto, A., Apr 2013, In: Plant physiology. 161, 4, p. 1930-1951

    Research output: Contribution to journalArticlepeer-review

  46. Published

    Kaon B parameter from quenched domain-wall QCD

    Khan, A. A., Aoki, S., Aoki, Y., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Izubuchi, T., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K. I., Okawa, M., Shanahan, H. P., Taniguchi, Y., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, 1 Dec 2001, In: Physical Review D . 6411, 11, p. - 21 p.

    Research output: Contribution to journalArticlepeer-review

  47. Published

    Kaon B-parameter from quenched domain-wall QCD

    Khan, A. A., Aoki, S., Aoki, Y., Burkhalter, R., Ejiri, S., Fikugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Izubuchi, T., Kanaya, K., Kaneko, T., Kuramashi, Y., Nagai, K. I., Noaki, J., Okawa, M., Shanahan, H. P., Taniguchi, Y., Ukawa, A., Yoshie, T. & 1 others, CP-PACS collaboration, Mar 2001, In: Nuclear Physics B - Proceedings Supplements. 94, p. 287-290 4 p.

    Research output: Contribution to journalArticlepeer-review

  48. Published

    Kernels from matching operations

    Watkins, C., 1999.

    Research output: Working paper

  49. Published

    Kolmogorov complexity: Sources, theory and applications

    Gammerman, A. & Vovk, V., 1999, In: The Computer Journal. 42, 4, p. 252-255 4 p.

    Research output: Contribution to journalArticlepeer-review

  50. Published

    Languages as Hyperplanes: grammatical inference with string kernels

    Clark, A., Costa Florêncio, C. & Watkins, C., 2006, Proceedings of ECML. p. 90-101

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  51. Published

    Languages as hyperplanes: grammatical inference with string kernels

    Clark, A., Costa Florêncio, C. & Watkins, C., 1 Mar 2011, In: Machine Learning. 82, 3, p. 351-373

    Research output: Contribution to journalArticlepeer-review

  52. Published

    Lattice calculation of the branching ratio for some of the exclusive modes of B-]S-gamma

    BOWLER, K. C., HAZEL, N. M., HENTY, D. S., HOEBER, H., KENWAY, R. D., RICHARDS, D. G., SHANAHAN, H. P., SIMONE, J. N., FLYNN, J. M., GOUGH, B. J., ALLTON, C., LELLOUCH, L., NIEVES, J. & WITTIG, H., 1 May 1995, In: Physical Review D . 51, 9, p. 4955-4970 16 p.

    Research output: Contribution to journalArticlepeer-review

  53. Published

    Lattice calculation of the penguin diagram decay B→K*γ

    BOWLER, K. C., HAZEL, N. M., HENTY, D. S., HOEBER, H., KENWAY, R. D., RICHARDS, D. G., SHANAHAN, H. P., SIMONE, J. N., FLYNN, J. M. & GOUGH, B. J., 7 Mar 1994, In: Physical Review Letters. 72, 10, p. 1398-1401 4 p.

    Research output: Contribution to journalArticlepeer-review

  54. Published

    Lattice study of the decay (B)over-bar(0)->p(+)l(-)(v)over-bar(l): Model-independent determination of vertical bar V-ub vertical bar

    Flynn, J. M., Nieves, J., Bowler, K. C., Hazel, N. M., Henty, D. S., Hoeber, H., Kenway, R. D., Richards, D. G., Gough, B. J., Lellouch, L. P. & Shanahan, H. P., 19 Feb 1996, In: Nuclear Physics B. 461, 1-2, p. 327-349 23 p.

    Research output: Contribution to journalArticlepeer-review

  55. Published

    Learning by Support Vector Machine

    Gammerman, A. & Vovk, V., 1998.

    Research output: Contribution to conferenceOther

  56. Published

    Learning by transduction

    Gammerman, A., Vapnik, V. & Vovk, V., 1998, Proceedings of the Fourteenth Conference on Uncertainty in Articial Intelligence. San Francisco, CA: Morgan Kaufmann, p. 148-156 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  57. Forthcoming

    Learning interpretable disease self-representations for drug repositioning

    Galeano Galeano, D., Frasca, F., Gonzalez, G., Lapanogov, I., Veselkov, K., Paccanaro, A. & Bronstein, M. M., 2019, (Accepted/In press) Conference on Neural Information Processing Systems (NeurIPS) 2019: Graph representation Learning Workshop .

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  58. Published

    Light hadron spectroscopy with two flavors of dynamical quarks on the lattice

    Khan, A. A., Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, 1 Mar 2002, In: Physical Review D . 65, 5, p. - 50 p.

    Research output: Contribution to journalArticlepeer-review

  59. Published

    Light hadron spectrum and quark masses in QCD with two flavors of dynamical quarks

    Khan, A. A., Aoki, S., Boyd, G., Burkhalter, R., Ejiri, S., Fukugita, M., Hashimoto, S., Ishizuka, N., Iwasaki, Y., Kanaya, K., Kaneko, T., Kuramashi, Y., Manke, T., Nagai, K., Okawa, M., Shanahan, H. P., Ukawa, A., Yoshie, T. & CP-PACS Collaboration, Apr 2000, In: Nuclear Physics B - Proceedings Supplements. 83-4, p. 176-178 3 p.

    Research output: Contribution to journalArticlepeer-review

  60. Published

    Location Tracking Using Smartphone Accelerometer and Magnetometer Traces

    Nguyen, D. K. A., Akram, R. N., Markantonakis, K., Luo, Z. & Watkins, C., 26 Aug 2019, The First Location Privacy Workshop (LPW 2019), the 14th International Conference on Availability, Reliability and Security (ARES 2019). Association for Computing Machinery (ACM), p. 1-9 9 p. 96

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  61. Published

    Machine learning classification with confidence: Application of transductive conformal predictors to MRI-based diagnostic and prognostic markers in depression

    Nouretdinov, I., Costafreda, S. G., Gammerman, A., Chervonenkis, A., Vovk, V., Vapnik, V. & Fu, C. H. Y., 15 May 2011, In: NeuroImage. 56, 2, p. 809-813 5 p.

    Research output: Contribution to journalArticlepeer-review

  62. Published

    Markov analysis of protein sequence similarities

    Chennubhotla, C. & Paccanaro, A., 2003, Lecture Notes in Computer Science. Springer, Vol. 2859. p. 278-286

    Research output: Chapter in Book/Report/Conference proceedingChapter

  63. Published

    Method for Separately Permissioned Communication

    Watkins, C. & Denker, J., 2000, IPC No. US Patent, Patent No. 6064878

    Research output: Patent

  64. Published

    Method of Automatic Verification of Personal Identity

    Watkins, C., 1998, IPC No. US Patent, Patent No. 5719560

    Research output: Patent

  65. Published

    Mining the biomedical literature to predict shared drug targets in DrugBank

    Caniza Vierci, H., Galeano Galeano, D. & Paccanaro, A., 2017, XLIII Conferencia Latinoamericana en Informática CLEI 2017. IEEE Xplore, p. 1-5 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  66. In preparation

    modCDF - modifying CDF's for microarrays using sequence similarity

    Shanahan, H., Harrison, A., Upton, G. & Memon, F., 2012, (In preparation) In: Bioinformatics. 2 p.

    Research output: Contribution to journalArticlepeer-review

  67. Published

    Molecular evolution

    Ratner, V. A., Zharkikh, A. A., Kolchanov, N. A., Rodin, S. N., Solovyev, V. & Antonoc, A. S., 1996, In: Biomathematics. 24

    Research output: Contribution to journalArticlepeer-review

  68. Published

    Molecular mechanism of the somatic hypermutagenesis in immunoglobulin genes

    Kolchanov, N. A., Solovyev, V. & Rogozin, I. B., 1985, In: Proceedings of the USSR Academy of Science (Russ). 281, p. 994-999

    Research output: Contribution to journalArticlepeer-review

  69. Published

    Mondrian Condence Machine

    Vovk, V., Lindsay, D., Nouretdinov, I. & Gammerman, A., Mar 2003, (On-line Compression Modelling project).

    Research output: Working paper

  70. Published

    Mondrian Confidence Machine

    Vovk, V., Lindsay, D., Nouretdinov, I. & Gammerman, A., Mar 2003, (On-line Compression Modelling project).

    Research output: Working paper

  71. Published

    Multiple sequence alignment based on new approaches of tree construction and sequences comparison

    Solovyev, V., Streletc, V. B., Milanesi, L., Lim, H. (ed.), Fickett, J. (ed.), Cantor, C. (ed.) & Robbins, R. (ed.), 1993, Proceedings of the 2nd International conference on Bioinformatics, Supercomputing, and Complex genome analysis.. World Scientific, p. 419-428

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  72. Published

    Multiprobabilistic prediction in early medical diagnoses

    Nouretdinov, I., Devetyarov, D., Vovk, V., Burford, B., Camuzeaux, S., Gentry-Maharaj, A., Tiss, A., Smith, C., Luo, Z., Chervonenkis, A., Hallett, R., Waterfield, M., Cramer, R., Timms, J. F., Jacobs, I. & Gammerman, A., Jun 2015, In: Annals of Mathematics and Artificial Intelligence. 74, 1-2, p. 203-222 20 p.

    Research output: Contribution to journalArticlepeer-review

  73. Published

    Multiprobabilistic Venn Predictors with Logistic Regression

    Nouretdinov, I., Devetyarov, D., Burford, B., Camuzeaux, S., Gentry-Maharaj, A., Tiss, A., Smith, C., Luo, Z., Chervonenkis, A., Hallett, R., Vovk, V., Waterfield, M., Cramer, R., Timms, J. F., Jacobs, I., Menon, U. & Gammerman, A., 2012, Artificial Intelligence Applications and Innovations - AIAI 2012 International Workshops: AIAB, AIeIA, CISE, COPA, IIVC, ISQL, MHDW, and WADTMB, Halkidiki, Greece, September 27-30, 2012, Proceedings, Part II. Iliadis, L., Maglogiannis, I., Papadopoulos, H., Karatzas, K. & Sioutas, S. (eds.). Springer, Vol. 382. (IFIP Advances in Information and Communication Technology).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  74. Published

    mutation3D: Cancer Gene Prediction Through Atomic Clustering of Coding Variants in the Structural Proteome

    Meyer, M. J., Lapcevic, R., Romero, A. E., Yoon, M., Das, J., Beltrán, J. F., Mort, M., Stenson, P. D., Cooper, D. N., Paccanaro, A. & Yu, H., May 2016, In: Human Mutation. 37, 5, p. 447-456 10 p.

    Research output: Contribution to journalArticlepeer-review

  75. Published

    Network modeling of patients’ biomolecular profiles for clinical phenotype/outcome prediction

    Gliozzo, J., Perlasca, P., Mesiti, M., Casiraghi, E., Vallacchi, V., Vergani, E., Frasca, M., Grossi, G., Petrini, A., Re, M., Paccanaro, A. & Valentini, G., 27 Feb 2020, In: Scientific Reports. 10, p. 1-15 15 p., 3612.

    Research output: Contribution to journalArticlepeer-review

  76. Published

    Neurogenomic Signatures of Successes and Failures in Life-History Transitions in a Key Insect Pollinator

    Manfredini, F., Romero Lopez, A., Pedroso Rovira, I., Paccanaro, A., Sumner, S. & Brown, M., 1 Nov 2017, In: Genome Biology and Evolution. 9, 11, p. 3059-3072 14 p.

    Research output: Contribution to journalArticlepeer-review

  77. Published

    New elements of glucocorticoid-receptor binding sites of hormone-regulated genes

    Seledtsov, I. A., Solovyev, V. V. & Merkulova, T. I., 23 Jul 1991, In: BBA - Gene Structure and Expression . 1089, 3, p. 367-376 10 p.

    Research output: Contribution to journalArticlepeer-review

  78. Published

    nGASP the nematode genome annotation assessment project

    Coghlan, A., Fiedler, T. J., McKay, S. J., Flicek, P., Harris, T. W., Blasiar, D., Stein, L. D. & Solovyev, V., 2008, In: BMC Bioinformatics. 9, p. 549-549 1 p.

    Research output: Contribution to journalArticlepeer-review

  79. Published

    Non-conformity measures in multi-class prediction

    Nouretdinov, I., Santos, M. & Gammerman, A., Jul 2011, p. 57. 1 p.

    Research output: Contribution to conferenceAbstract

  80. Published

    Normalized Affymetrix expression data are biased by G-quadruplex formation

    Shanahan, H. P., Memon, F. N., Upton, G. J. G. & Harrison, A. P., 1 Apr 2012, In: Nucleic Acids Research. 40, 8, p. 3307-3315 9 p.

    Research output: Contribution to journalArticlepeer-review

  81. Published

    Normalized nonconformity measures for regression conformal prediction

    Papadopoulos, H., Gammerman, A. & Vovk, V., 2008, Proceedings of the IASTED International Conference on Articial Intelligence and Applications. p. 64-69 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  82. Published

    NRQCD on an anisotropic lattice

    Drummond, I. T., Horgan, R. R., Manke, T. & Shanahan, H. P., Mar 1999, In: Nuclear Physics B - Proceedings Supplements. 73, p. 336-338 3 p.

    Research output: Contribution to journalArticlepeer-review

  83. Published
  84. Published

    Online Prediction of Ovarian Cancer

    Zhdanov, F., Vovk, V., Burford, B., Devetyarov, D., Nouretdinov, I. & Gammerman, A., 2009, Proceedings of the 12th Conference on Artificial Intelligence in Medicine. p. 375-379 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  85. Published

    On-line predictive linear regression

    Vovk, V., Nouretdinov, I. & Gammerman, A., Jun 2009, In: The Annals of Statistics. 37, 3, p. 1566-1590 25 p.

    Research output: Contribution to journalArticlepeer-review

  86. Published

    Online region prediction with real teachers

    Ryabko, D., Vovk, V. & Gammerman, A., Mar 2003, (On-line Compression Modelling project).

    Research output: Working paper

  87. Published

    OsWRKY22, a monocot WRKY gene, plays a role in the resistance response to blast

    Abbruscato, P., Nepusz, T., Mizzi, L., Del Corvo, M., Morandini, P., Fumasoni, I., Michel, C., Paccanaro, A., Guiderdoni, E., Schaffrath, U., Morel, J-B., Piffanelli, P. & Faivre-Rampant, O., 2012, In: Molecular Plant Pathology.

    Research output: Contribution to journalArticlepeer-review

  88. Published

    PDB-Hadoop: Parallelising user applications on the protein databank using Apache Hadoop

    AlNasir, J. & Shanahan, H., Jul 2015.

    Research output: Contribution to conferencePosterpeer-review

  89. In preparation

    PDB-Hadoop: Parallelising Legacy applications on the Protein Databank using Apache Hadoop

    AlNasir, J. & Shanahan, H., 2015, (In preparation) In: Bioinformatics.

    Research output: Contribution to journalArticlepeer-review

  90. Published

    Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment

    Bajic, V. B., Brent, M. R., Brown, R. H., Frankish, A., Harrow, J., Ohler, U., Solovyev, V. V. & Tan, S. L., 2006, In: Genome Biology. 7, Suppl. 1, p. 3.1-3.13 13 p.

    Research output: Contribution to journalLiterature reviewpeer-review

  91. Published

    Planar Languages and Learnability

    Clark, A., Costa Florêncio, C., Watkins, C. & Serayet, M., 2006, p. 148-160.

    Research output: Contribution to conferencePaper

  92. Published

    Plant promoter prediction with confidence estimation

    Shahmuradov, I. A., Solovyev, V. V. & Gammerman, A. J., 2005, In: Nucleic Acids Research. 33, 3, p. 1069-1076 8 p.

    Research output: Contribution to journalArticlepeer-review

  93. Published

    PlantProm: a database of plant promoter sequences

    Shahmuradov, I. A., Gammerman, A. J., Hancock, J. M., Bramley, P. M. & Solovyev, V. V., 1 Jan 2003, In: Nucleic Acids Research. 31, 1, p. 114-117 4 p.

    Research output: Contribution to journalArticlepeer-review

  94. Published

    Plug-in martingales for testing exchangeability on-line

    Fedorova, V., Gammerman, A., Nouretdinov, I. & Vovk, V., 2012, Proceedings of the 29th International Conference on Machine Learning (ICML-12). Langford, J. & Pineau, J. (eds.). Omnipress, p. 1639-1646 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  95. Published

    Predicting {alpha}-helix and {beta}-strand segments of globular proteins

    Solovyev, V. V. & Salamov, A. A., 1 Dec 1994, In: Bioinformatics. 10, 6, p. 661-669 9 p.

    Research output: Contribution to journalArticlepeer-review

  96. Published

    Predicting clinical outcome in patients diagnosed with synchronous ovarian and endometrial cancer

    Ramus, S. J., Elmasry, K., Luo, Z., Gammerman, A., Lu, K., Ayhan, A., Singh, N., McCluggage, G., Jacobs, I. J., Whittaker, J. C. & Gayther, S. A., 15 Sep 2008, In: Clinical Cancer Research. 14, 18, p. 5840-5848

    Research output: Contribution to journalArticlepeer-review

  97. Published

    Predicting essential genes in fungal genomes

    Seringhaus, M., Paccanaro, A., Borneman, A., Snyder, M. & Gerstein, M., 2006, In: Genome Research. 16, 9, p. 1126-35 10 p.

    Research output: Contribution to journalArticlepeer-review

  98. Published

    Predicting interactions in protein networks by completing defective cliques

    Yu, H., Paccanaro, A., Trifonov, V. & Gerstein, M., 2006, In: Bioinformatics. 22, 7, p. 823-9 7 p.

    Research output: Contribution to journalArticlepeer-review

  99. Published

    Predicting internal exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames

    Solovyev, V. V., Salamov, A. A. & Lawrence, C. B., 11 Dec 1994, In: Nucleic Acids Research. 22, 24, p. 5156-63 8 p.

    Research output: Contribution to journalArticlepeer-review

  100. Published

    Predicting the Frequencies of Drug Side effects

    Galeano, D., Li, S., Gerstein, M. & Paccanaro, A., 11 Sep 2020, In: Nature Communications. 11, p. 1-14 14 p., 4575.

    Research output: Contribution to journalArticlepeer-review