1. 2020
  2. Published

    Feeder-Level Deep Learning-based Photovoltaic Penetration Estimation Scheme

    Zhang, X., Kuenzel, S. & Watkins, C., 13 Oct 2020.

    Research output: Contribution to conferencePaper

  3. Published

    Predicting the Frequencies of Drug Side effects

    Galeano, D., Li, S., Gerstein, M. & Paccanaro, A., 11 Sep 2020, In : Nature Communications. 11, p. 1-14 14 p., 4575.

    Research output: Contribution to journalArticle

  4. E-pub ahead of print

    Epidemic contact tracing with smartphone sensors

    Nguyen, D. K. A., Luo, Z. & Watkins, C., 1 Sep 2020, In : Journal of Location Based Services. 37 p.

    Research output: Contribution to journalArticle

  5. Published

    What is semantic diversity and why does it facilitate visual word recognition?

    Cevoli, B., Watkins, C. & Rastle, K., 14 Jul 2020, In : Behavior Research Methods. p. 1-17 17 p.

    Research output: Contribution to journalArticle

  6. Published

    Transatlantic Perspectives on the Use of Data Science in Museums and Heritage

    Platts, H., Howard, D., Dalton, P. & Watkins, C., Jul 2020, UK Research and Innovation.

    Research output: Chapter in Book/Report/Conference proceedingOther contribution

  7. Published

    Privacy-Functionality Trade-off: A Privacy-Preserving Multi-Channel Smart Metering System

    Zhang, X., Kuenzel, S., Córdoba-Pachón, J-R. & Watkins, C., 21 Jun 2020, In : Energies. 13, 12, p. 1-30 30 p., 3221.

    Research output: Contribution to journalArticle

  8. Published

    The Corrected Gene Proximity map for analyzing the 3D genome organization using Hi-C data

    Ye, C., Paccanaro, A., Gerstein, M. & Yan, K-K., 29 May 2020, In : BMC Bioinformatics. 21, p. 1-18 18 p., 222.

    Research output: Contribution to journalArticle

  9. Published

    Anomaly Detection in Video Games

    Wilkins, B., Watkins, C. & Stathis, K., 20 May 2020, In : ArXiv.org. p. 1-4 4 p., 2005.10211.

    Research output: Contribution to journalArticle

  10. Published

    Network modeling of patients’ biomolecular profiles for clinical phenotype/outcome prediction

    Gliozzo, J., Perlasca, P., Mesiti, M., Casiraghi, E., Vallacchi, V., Vergani, E., Frasca, M., Grossi, G., Petrini, A., Re, M., Paccanaro, A. & Valentini, G., 27 Feb 2020, In : Scientific Reports. 10, p. 1-15 15 p., 3612.

    Research output: Contribution to journalArticle

  11. Published

    Structuring Time Series Data to Gain Insight into Agent Behaviour

    Al-Baghdadi, N., Wisniewski, W., Lindsay, D., Lindsay, S., Kalnishkan, Y. & Watkins, C., 24 Feb 2020, Proceedings of the 3rd International Workshop on Big Data for Financial News and Data. IEEE, p. 5480-5490 11 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  12. 2019
  13. Published
  14. Published

    Location Tracking Using Smartphone Accelerometer and Magnetometer Traces

    Nguyen, D. K. A., Akram, R. N., Markantonakis, K., Luo, Z. & Watkins, C., 26 Aug 2019, The First Location Privacy Workshop (LPW 2019), the 14th International Conference on Availability, Reliability and Security (ARES 2019). Association for Computing Machinery (ACM), p. 1-9 9 p. 96

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  15. E-pub ahead of print

    Explaining Deep Learning Models with Constrained Adversarial Examples

    Moore, J., Hammerla, N. & Watkins, C., 23 Aug 2019, Pacific Rim International Conference on Artificial Intelligence. Springer, p. 43-56 14 p. (Lecture Notes in Computer Science; vol. 11670).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  16. Published

    Disease gene prediction for molecularly uncharacterized diseases

    Caceres, J. & Paccanaro, A., 5 Jul 2019, In : PLoS Computational Biology. 15, 7, p. 1-14 14 p., e1007078.

    Research output: Contribution to journalArticle

  17. Submitted

    Teaching FAIR

    Shanahan, H., 4 May 2019, (Submitted) In : Data Intelligence.

    Research output: Contribution to journalArticle

  18. Submitted

    9 Simple recommendations for teaching data skills

    Shanahan, H., 16 Apr 2019, (Submitted) In : Data Science Journal.

    Research output: Contribution to journalArticle

  19. In preparation

    An evolutionary model that satisfies detailed balance

    Lember, J. & Watkins, C., 27 Feb 2019, (In preparation) In : ArXiv.org.

    Research output: Contribution to journalArticle

  20. Submitted

    Embedding Open Science practice into Data Science Training

    Shanahan, H., 1 Jan 2019, (Submitted).

    Research output: Contribution to conferencePoster

  21. Forthcoming

    Learning interpretable disease self-representations for drug repositioning

    Galeano Galeano, D., Frasca, F., Gonzalez, G., Lapanogov, I., Veselkov, K., Paccanaro, A. & Bronstein, M. M., 2019, (Accepted/In press) Conference on Neural Information Processing Systems (NeurIPS) 2019: Graph representation Learning Workshop .

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  22. 2018
  23. Published

    Transcriptomics: Quantifying Non-Uniform Read Distribution Using MapReduce

    Alnasir, J. & Shanahan, H., 27 Dec 2018, In : International Journal for the Foundations of Computer Science. 29, 8, 20 p.

    Research output: Contribution to journalArticle

  24. Published

    The application of Hadoop in structural bioinformatics

    Alnasir, J. & Shanahan, H., 20 Nov 2018, In : Briefings in Bioinformatics. p. 1-10 10 p., bby106.

    Research output: Contribution to journalArticle

  25. Published

    Systems Metagenomics

    Shanahan, H. & Radwan, G., 15 Jul 2018.

    Research output: Contribution to conferencePoster

  26. Published

    Subclonal mutation selection in mouse lymphomagenesis identifies known cancer loci and suggests novel candidates

    Webster, P., Dawes, J., Dewchand, H., Takacs, K., Iadarola, B., Bolt, B., Caceres Silva, J., Kaczor, J., Dharmalingam, G., Dore, M., Game, L., Adejumo, T., Elliott, J., Naresh, K., Karimi, M., Rekopoulou, K., Tan, G., Paccanaro, A. & Uren, A., 9 Jul 2018, In : Nature Communications. 9, p. 1-14 14 p., 2649.

    Research output: Contribution to journalArticle

  27. Published
  28. Submitted

    “Ethics When You Least Expect It”: A Modular Approach to Data Ethics Instruction

    Shanahan, H., Bezuidenhout, L. & Quick, R., 2018, (Submitted).

    Research output: Contribution to conferencePaper

  29. Published

    A Recommender System Approach for Predicting Drug Side Effects

    Galeano Galeano, D. & Paccanaro, A., 2018, IJCNN 2018: International Joint Conference on Neural Networks. IEEE Xplore, p. 1-7 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  30. 2017
  31. Published

    Drug cocktail selection for the treatment of chagas disease: A multi-objective approach

    Torres Bobadilla, M., Caceres Silva, J., Jimenez, R., Yubero, V., Vega, C., Rolón, M., Cernuzzi, L., Barán, B. & Paccanaro, A., 21 Dec 2017, SLIOIA - Simposio Latinoamericano de Investigación de Operaciones e Inteligencia Artificial 2017. p. 1-5 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  32. Published

    Co-location epidemic tracking on London public transports using low power mobile magnetometer

    Nguyen, D. K. A., Watkins, C. & Luo, Z., 23 Nov 2017, The 8th International Conference on Indoor Positioning and Indoor Navigation, Sept 18-21, 2017, Japan. IEEE, p. 1-8 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  33. Published

    Neurogenomic Signatures of Successes and Failures in Life-History Transitions in a Key Insect Pollinator

    Manfredini, F., Romero Lopez, A., Pedroso Rovira, I., Paccanaro, A., Sumner, S. & Brown, M., 1 Nov 2017, In : Genome Biology and Evolution. 9, 11, p. 3059-3072 14 p.

    Research output: Contribution to journalArticle

  34. Published

    Conformal prediction of biological activity of chemical compounds

    Toccaceli, P., Nouretdinov, I. & Gammerman, A., Oct 2017, In : Annals of Mathematics and Artificial Intelligence. 81, p. 105–123 19 p.

    Research output: Contribution to journalArticle

  35. Published

    Criteria of efficiency for set-valued classification

    Vovk, V., Nouretdinov, I., Fedorova, V., Petej, I. & Gammerman, A., Oct 2017, In : Annals of Mathematics and Artificial Intelligence. 81, p. 21-46 26 p.

    Research output: Contribution to journalArticle

  36. Published

    Biological Big Bytes: Integrative Analysis of Large Biological Datasets

    Shanahan, H., Chen, M., Harrison, A. & Orlov, Y., 13 Sep 2017, In : Journal of Integrative Bioinformatics. 14, 3, 2 p.

    Research output: Contribution to journalEditorial

  37. Published

    An Exploratory Analysis on Drug Target Locality

    Caceres Silva, J. & Paccanaro, A., Sep 2017, AGRANDA - Simposio Argentino de GRANdes DAtos 2017.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  38. Published

    Combination of Conformal Predictors for Classification

    Toccaceli, P. & Gammerman, A., 13 Jun 2017, Proceedings of Machine Learning Research. Lawrence, N. & Reid, M. (eds.). Vol. 60. p. 39-61 23 p. (The Proceedings of Machine Learning Research; vol. 60).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  39. Published

    Valid Probabilistic Prediction of Life Status after Percutaneous Coronary Intervention procedure

    Volkhonskiy, D., Nouretdinov, I., Gammerman, A. & Lim, P., Jun 2017, 6th Symposium on Conformal and Probabilistic Prediction with Applications (COPA 2017).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  40. Published

    Drug targets prediction using chemical similarity

    Galeano Galeano, D. & Paccanaro, A., 26 Jan 2017, XLII Conferencia Latinoamericana de Informatica (CLEI). IEEE Xplore, p. 1-7 7 p. (2016 XLII Latin American Computing Conference (CLEI)).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  41. Published

    A Novel Method to Detect Bias in Short Read NGS Data

    Alnasir, J. & Shanahan, H., 2017, In : Journal of Integrative Bioinformatics. 14, 3, p. 1-9 9 p.

    Research output: Contribution to journalArticle

  42. Published

    Inductive Conformal Martingales for Change-Point Detection

    Volkhonskiy, D., Burnaev, E., Nouretdinov, I., Gammerman, A. & Vovk, V., 2017, 6th Symposium on Conformal and Probabilistic Prediction with Applications (COPA 2017). p. 1-22 22 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  43. Published

    Mining the biomedical literature to predict shared drug targets in DrugBank

    Caniza Vierci, H., Galeano Galeano, D. & Paccanaro, A., 2017, XLIII Conferencia Latinoamericana en Informática CLEI 2017. IEEE Xplore, p. 1-5 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  44. 2016
  45. Published
  46. Published

    Internet discussion forums: Maximizing choice in health-seeking behaviour during public health emergencies

    Cole, J., Kleine, D. & Watkins, C., 13 Jun 2016, 2016 International Conference On Cyber Situational Awareness, Data Analytics And Assessment (CyberSA). Onwubiko, C. (ed.). London: IEEE, p. 99 104 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  47. Published
  48. Published

    mutation3D: Cancer Gene Prediction Through Atomic Clustering of Coding Variants in the Structural Proteome

    Meyer, M. J., Lapcevic, R., Romero, A. E., Yoon, M., Das, J., Beltrán, J. F., Mort, M., Stenson, P. D., Cooper, D. N., Paccanaro, A. & Yu, H., May 2016, In : Human Mutation. 37, 5, p. 447-456 10 p.

    Research output: Contribution to journalArticle

  49. Published

    Conformal Predictors for Compound Activity Prediction

    Toccaceli, P., Nouretdinov, I. & Gammerman, A., 17 Apr 2016, Conformal and Probabilistic Prediction with Applications: 5th International Symposium, COPA 2016 Madrid, Spain, April 20–22, 2016 Proceedings. Springer, Vol. 9653. p. 51-66 16 p. (Lecture Notes in Computer Science; vol. 9653).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  50. Published

    Criteria of Efficiency for Conformal Prediction

    Vovk, V., Fedorova, V., Nouretdinov, I. & Gammerman, A., 17 Apr 2016, Conformal and Probabilistic Prediction with Applications: 5th International Symposium, COPA 2016 Madrid, Spain, April 20–22, 2016 Proceedings. Springer, Vol. 9653. p. 23-39 17 p. (Lecture Notes in Computer Science; vol. 9653).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  51. Published

    Health Advice from Internet Discussion Forums: How Bad is Dangerous?

    Cole, J., Watkins, C. & Kleine, D., 6 Jan 2016, In : Journal of Medical Internet Research. 18, 1, p. 1-15 15 p., e4.

    Research output: Contribution to journalArticle

  52. 2015
  53. Published

    Hypergraphical Conformal Predictors

    Fedorova, V., Gammerman, A., Nouretdinov, I. & Vovk, V., 21 Dec 2015, In : International Journal on Artificial Intelligence Tools. 24, 6, 1560003.

    Research output: Contribution to journalArticle

  54. E-pub ahead of print

    A network medicine approach to quantify distance between hereditary disease modules on the interactome

    Caniza, H., Romero, A. E. & Paccanaro, A., 3 Dec 2015, In : Scientific Reports. 5, p. 1-10 10 p., 17658.

    Research output: Contribution to journalArticle

  55. Published

    International employees’ concerns during serious disease outbreaks and the potential impact on business continuity: Lessons identified from the 2014–15 West African Ebola outbreak

    Cole, J. & Watkins, C., 1 Dec 2015, In : Journal of Business Continuity and Emergency Planning. 9, 2, p. 149-162 14 p.

    Research output: Contribution to journalArticle

  56. Published

    Investigation into the annotation of protocol sequencing steps in the sequence read archive

    Alnasir, J. & Shanahan, H., Dec 2015, In : GigaScience. 4, 1, p. 1-11 11 p.

    Research output: Contribution to journalArticle

  57. Published

    Teaching Data Science and Cloud Computing in Low and Middle Income Countries

    Shanahan, H., Harrison, A. & May, S., 23 Nov 2015, In : Advanced Techniques in Biology & Medicine. 3, 3, p. 1-5 5 p., 1000150.

    Research output: Contribution to journalArticle

  58. Published

    Alexey Chervonenkis's Bibliography: Introductory Comments

    Gammerman, A. & Vovk, V., Sep 2015, In : Journal of Machine Learning Research. 16, p. 2051-2066 16 p.

    Research output: Contribution to journalEditorial

  59. Published

    Alexey Chervonenkis's Bibliography

    Gammerman, A. & Vovk, V., Sep 2015, In : Journal of Machine Learning Research. 16, p. 2067-2080 14 p.

    Research output: Contribution to journalEditorial

  60. Published

    Preface to this Special Issue

    Gammerman, A. & Vovk, V., Sep 2015, In : Journal of Machine Learning Research. 16, p. 1677-1681 5 p.

    Research output: Contribution to journalEditorial

  61. E-pub ahead of print

    Immune tolerance maintained by cooperative interactions between T cells and antigen presenting cells shapes a diverse TCR repertoire

    Best, K., Chain, B. & Watkins, C., 7 Aug 2015, In : Frontiers in Immunology. 6, p. 1-14 14 p., 360.

    Research output: Contribution to journalArticle

  62. Published

    Efficient Sampling with Small Populations: a Genetic Algorithm Satisfying Detailed Balance

    Watkins, C. & Buttkewitz, Y., 11 Jul 2015, Gecco Companion '15: Proceedings of the Companion Publication of the 2015 Genetic and Evolutionary Computation Conference. p. 1517-1518 2 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  63. Published
  64. Published

    Multiprobabilistic prediction in early medical diagnoses

    Nouretdinov, I., Devetyarov, D., Vovk, V., Burford, B., Camuzeaux, S., Gentry-Maharaj, A., Tiss, A., Smith, C., Luo, Z., Chervonenkis, A., Hallett, R., Waterfield, M., Cramer, R., Timms, J. F., Jacobs, I. & Gammerman, A., Jun 2015, In : Annals of Mathematics and Artificial Intelligence. 74, 1-2, p. 203-222 20 p.

    Research output: Contribution to journalArticle

  65. Published

    Conformal Anomaly Detection of Trajectories with a Multi-class Hierarchy

    Smith, J., Nouretdinov, I., Craddock, R., Offer, C. & Gammerman, A., 3 Apr 2015, Statistical Learning and Data Sciences: Third International Symposium, SLDS 2015, Egham, UK, April 20-23, 2015, Proceedings. Gammerman, A., Vovk, V. & Papadopoulos, H. (eds.). Springer, p. 281-290 10 p. (Lecture Notes in Computer Science; vol. 9047).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  66. Published

    Conformal Clustering and Its Application to Botnet Traffic

    Cherubin, G., Nouretdinov, I., Gammerman, A., Jordaney, R., Wang, Z., Papini, D. & Cavallaro, L., 3 Apr 2015, Statistical Learning and Data Sciences: Third International Symposium, SLDS 2015, Egham, UK, April 20-23, 2015, Proceedings. Gammerman, A., Vovk, V. & Papadopoulos, H. (eds.). Springer, p. 313-322 10 p. (Lecture Notes in Computer Science; vol. 9047).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  67. Published
  68. In preparation

    PDB-Hadoop: Parallelising Legacy applications on the Protein Databank using Apache Hadoop

    AlNasir, J. & Shanahan, H., 2015, (In preparation) In : Bioinformatics.

    Research output: Contribution to journalArticle

  69. 2014
  70. Published

    Anomaly Detection of Trajectories with Kernel Density Estimation by Conformal Prediction

    Smith, J., Nouretdinov, I., Craddock, R., Offer, C. & Gammerman, A., 19 Sep 2014, Artificial Intelligence Applications and Innovations: AIAI2014 Workshops. Rhodes, Greece: Springer, p. 271-280 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  71. Published

    Bioinformatics on the cloud computing platform Azure

    Shanahan, H., Harrison, A. & Owen, A. M., 22 Jul 2014, In : PLoS ONE. 9, 7, p. e102642

    Research output: Contribution to journalArticle

  72. Published

    Biomedical Applications: Diagnostic and Prognostic

    Nouretdinov, I., Bellotti, T. & Gammerman, A., 2014, Conformal Prediction for Reliable Machine Learning: Theory, Adaptations and Applications. Balasubramanian, V., Ho, S-S. & Vovk, V. (eds.). Elsevier, p. 217-230 14 p. 11

    Research output: Chapter in Book/Report/Conference proceedingChapter

  73. Published

    Feature Selection

    Bellotti, T., Nouretdinov, I., Yang, M. & Gammerman, A., 2014, Conformal Prediction for Reliable Machine Learning: Theory, Adaptations and Applications. Balasubramanian, V., Ho, S-S. & Vovk, V. (eds.). Elsevier, p. 115-130 16 p. 6

    Research output: Chapter in Book/Report/Conference proceedingChapter

  74. Published

    SVM Venn Machine with k-Means Clustering

    Zhou, C., Nouretdinov, I., Luo, Z. & Gammerman, A., 2014, Artificial Intelligence Applications and Innovations: AIAI2014 Workshops. Rhodes, Greece, p. 251-260 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  75. 2013
  76. E-pub ahead of print

    Dissecting the chromatin interactome of microRNA genes

    Chen, D., Fu, L-Y., Zhang, Z., Yu, G., Zhang, H., Jiang, L., Harrison, A., Shanahan, H., Klukas, C., Zhang, H-Y., Ruan, Y., Chen, LI-LI. & Chen, M., 20 Dec 2013, In : Nucleic Acids Research.

    Research output: Contribution to journalArticle

  77. Published

    Conformal prediction under hypergraphical models

    Fedorova, V., Gammerman, A., Nouretdinov, I. & Vovk, V., Oct 2013, The 9th Artificial Intelligence Applications and Innovations Conference (AIAI): 2nd Workshop on Conformal Prediction and its Applications. p. 371-383 13 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  78. Published

    Social Technologies for Community Response to Epidemics

    Cole, J. & Watkins, C., Aug 2013, Tackling Antimicrobial Resistance - Identifying Future Research Themes: Proceedings of the Conference Tackling Antimicrobial Resistance, 6 February 2013. London: Royal United Services Institute, p. 65-73 9 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  79. Published

    Jasmonate controls leaf growth by repressing cell proliferation and the onset of endoreduplication while maintaining a potential stand-by mode

    Noir, S., Bömer, M., Takahashi, N., Ishida, T., Tsui, T-L., Balbi, V., Shanahan, H., Sugimoto, K. & Devoto, A., Apr 2013, In : Plant physiology. 161, 4, p. 1930-1951

    Research output: Contribution to journalArticle

  80. Published

    A large-scale evaluation of computational protein function prediction

    Radivojac, P., Clark, W. T., Oron, T. R., Schnoes, A. M., Wittkop, T., Sokolov, A., Graim, K., Funk, C., Verspoor, K., Ben-Hur, A., Pandey, G., Yunes, J. M., Talwalkar, A. S., Repo, S., Souza, M. L., Piovesan, D., Casadio, R., Wang, Z., Cheng, J., Fang, H. & 82 others, Gough, J., Koskinen, P., Törönen, P., Nokso-Koivisto, J., Holm, L., Cozzetto, D., Buchan, D. W. A., Bryson, K., Jones, D. T., Limaye, B., Inamdar, H., Datta, A., Manjari, S. K., Joshi, R., Chitale, M., Kihara, D., Lisewski, A. M., Erdin, S., Venner, E., Lichtarge, O., Rentzsch, R., Yang, H., Romero, A. E., Bhat, P., Paccanaro, A., Hamp, T., Kaßner, R., Seemayer, S., Vicedo, E., Schaefer, C., Achten, D., Auer, F., Boehm, A., Braun, T., Hecht, M., Heron, M., Hönigschmid, P., Hopf, T. A., Kaufmann, S., Kiening, M., Krompass, D., Landerer, C., Mahlich, Y., Roos, M., Björne, J., Salakoski, T., Wong, A., Shatkay, H., Gatzmann, F., Sommer, I., Wass, M. N., Sternberg, M. J. E., Škunca, N., Supek, F., Bošnjak, M., Panov, P., Džeroski, S., Šmuc, T., Kourmpetis, Y. A. I., van Dijk, A. D. J., ter Braak, C. J. F., Zhou, Y., Gong, Q., Dong, X., Tian, W., Falda, M., Fontana, P., Lavezzo, E., Di Camillo, B., Toppo, S., Lan, L., Djuric, N., Guo, Y., Vucetic, S., Bairoch, A., Linial, M., Babbitt, P. C., Brenner, S. E., Orengo, C., Rost, B., Mooney, S. D. & Friedberg, I., Mar 2013, In : Nature Methods. 10, 3, p. 221-7 7 p.

    Research output: Contribution to journalArticle

  81. Forthcoming

    An Overview of Gene Regulation

    Shanahan, H. & Harrison, A., 2013, (Accepted/In press) Approaches to Integrative Bioinformatics. Chen, MI. & Hofstaedt, R. (eds.). Springer, p. 21-69

    Research output: Chapter in Book/Report/Conference proceedingChapter

  82. 2012
  83. Published

    Reliable Probability Estimates Based on Support Vector Machines for Large Multiclass Datasets

    Lambrou, A., Papadopoulos, H., Nouretdinov, I. & Gammerman, A., Sep 2012, Artificial Intelligence Applications and Innovations - AIAI 2012 International Workshops: AIAB, AIeIA, CISE, COPA, IIVC, ISQL, MHDW, and WADTMB, Proceedings.. Halkidiki, Greece, Vol. II. p. 182-191 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  84. Published

    A Census of Human Soluble Protein Complexes

    Havugimana, P. C., Hart, G. T., Nepusz, T., Yang, H., Turinsky, A. L., Li, Z., Wang, P. I., Boutz, D. R., Fong, V., Phanse, S., Babu, M., Craig, S. A., Hu, P., Wan, C., Vlasblom, J., Dar, V-N., Bezginov, A., Clark, G. W., Wu, G. C., Wodak, S. J. & 4 others, Tillier, E. R. M., Paccanaro, A., Marcotte, E. M. & Emili, A., 31 Aug 2012, In : Cell. 150, 5, p. 1068–1081

    Research output: Contribution to journalArticle

  85. Published

    Computational selection of transcriptomics experiments improves Guilt-by-Association analyses

    Bhat, P., Yang, H., Bogre, L., Devoto, A. & Paccanaro, A., 7 Aug 2012, In : PLoS ONE. 7, 8, e39681.

    Research output: Contribution to journalArticle

  86. Published

    Valid predictions with confidence estimation in an air pollution problem.

    Ivina, O., Nouretdinov, I. & Gammerman, A., 17 Jun 2012, In : Progress in Artificial Intelligence. 1, p. 235-243 9 p.

    Research output: Contribution to journalArticle

  87. Published

    Normalized Affymetrix expression data are biased by G-quadruplex formation

    Shanahan, H. P., Memon, F. N., Upton, G. J. G. & Harrison, A. P., 1 Apr 2012, In : Nucleic Acids Research. 40, 8, p. 3307-3315 9 p.

    Research output: Contribution to journalArticle

  88. Published

    Conformal predictors in early diagnostics of ovarian and breast cancers

    Devetyarov, D., Nouretdinov, I., Burford, B., Camuzeaux, S., Gentry-Maharaj, A., Tiss, A., Smith, C., Luo, Z., Chervonenkis, A., Hallett, R., Vovk, V., Waterfield, M., Cramer, R., Timms, J. F., Sinclair, J., Menon, U., Jacobs, I. & Gammerman, A., 2012, In : Progress in Artificial Intelligence. 1, p. 245 - 257 13 p.

    Research output: Contribution to journalArticle

  89. Published

    Detecting overlapping protein complexes in protein-protein interaction networks

    Nepusz, T., Yu, H. & Paccanaro, A., 2012, In : Nature Methods. 9, 5, p. 471–472 2 p.

    Research output: Contribution to journalArticle

  90. Forthcoming

    Determining Confidence of Predicted Interactions Between HIV-1 and Human Proteins Using Conformal Method

    Nouretdinov, I., Gammerman, A., Qi, Y. & Klein-Seetharaman, J., 2012, (Accepted/In press) Pacific Symposium on Biocomputing. Vol. 17. p. 311-322 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  91. Published

    Exploring the evolutionary path of plant MAPK networks

    Dóczi, R., Okrész, L., Romero, A. E., Paccanaro, A. & Bogre, L., 2012, In : Trends in Plant Science.

    Research output: Contribution to journalArticle

  92. Published

    GFam: a platform for automatic annotation of gene families

    Sasidharan, R., Nepusz, T., Swarbreck, D., Huala, E. & Paccanaro, A., 2012, In : Nucleic Acids Research. 40, 19, 15 p., e152.

    Research output: Contribution to journalArticle

  93. Published

    Improving GO semantic similarity measures by exploring the ontology beneath the terms and modelling uncertainty

    Yang, H., Nepusz, T. & Paccanaro, A., 2012, In : Bioinformatics. 28, 10, p. 1383-1389 7 p.

    Research output: Contribution to journalArticle

  94. In preparation

    modCDF - modifying CDF's for microarrays using sequence similarity

    Shanahan, H., Harrison, A., Upton, G. & Memon, F., 2012, (In preparation) In : Bioinformatics. 2 p.

    Research output: Contribution to journalArticle

  95. Published

    Multiprobabilistic Venn Predictors with Logistic Regression

    Nouretdinov, I., Devetyarov, D., Burford, B., Camuzeaux, S., Gentry-Maharaj, A., Tiss, A., Smith, C., Luo, Z., Chervonenkis, A., Hallett, R., Vovk, V., Waterfield, M., Cramer, R., Timms, J. F., Jacobs, I., Menon, U. & Gammerman, A., 2012, Artificial Intelligence Applications and Innovations - AIAI 2012 International Workshops: AIAB, AIeIA, CISE, COPA, IIVC, ISQL, MHDW, and WADTMB, Halkidiki, Greece, September 27-30, 2012, Proceedings, Part II. Iliadis, L., Maglogiannis, I., Papadopoulos, H., Karatzas, K. & Sioutas, S. (eds.). Springer, Vol. 382. (IFIP Advances in Information and Communication Technology).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  96. Published

    OsWRKY22, a monocot WRKY gene, plays a role in the resistance response to blast

    Abbruscato, P., Nepusz, T., Mizzi, L., Del Corvo, M., Morandini, P., Fumasoni, I., Michel, C., Paccanaro, A., Guiderdoni, E., Schaffrath, U., Morel, J-B., Piffanelli, P. & Faivre-Rampant, O., 2012, In : Molecular Plant Pathology.

    Research output: Contribution to journalArticle

  97. Published

    Plug-in martingales for testing exchangeability on-line

    Fedorova, V., Gammerman, A., Nouretdinov, I. & Vovk, V., 2012, Proceedings of the 29th International Conference on Machine Learning (ICML-12). Langford, J. & Pineau, J. (eds.). Omnipress, p. 1639-1646 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  98. Forthcoming

    Structural Pattern Discovery in Protein-Protein Interaction Networks

    Nepusz, T. & Paccanaro, A., 2012, (Accepted/In press) Handbook of Bio- and Neuroinformatics. Springer

    Research output: Chapter in Book/Report/Conference proceedingChapter

  99. Published

    Testing the Gauss linear assumption for on-line predictions

    Fedorova, V., Nouretdinov, I. & Gammerman, A., 2012, In : Progress in Artificial Intelligence. 1, 3, p. 205-213 9 p.

    Research output: Contribution to journalArticle

  100. 2011
  101. Published

    Early detection of ovarian cancer in samples pre-diagnosis using CA125 and MALDI-MS peaks

    Timms, J. F., Menon, U., Devetyarov, D., Tiss, A., Camuzeaux, S., McCurrie, K., Nouretdinov, I., Burford, B., Smith, C., Gentry-Maharaj, A., Hallett, R., Ford, J., Luo, Z., Vovk, V., Gammerman, A., Cramer, R. & Jacobs, I., Nov 2011, In : Cancer Genomics and Proteomics. 8, 6, p. 289-305

    Research output: Contribution to journalArticle

  102. Published

    Conformal prediction and testing exchangeability assumption

    Fedorova, V., Nouretdinov, I. & Gammerman, A., Jul 2011, p. 35. 1 p.

    Research output: Contribution to conferenceAbstract

  103. Published

    Non-conformity measures in multi-class prediction

    Nouretdinov, I., Santos, M. & Gammerman, A., Jul 2011, p. 57. 1 p.

    Research output: Contribution to conferenceAbstract

  104. Published

    Valid prediction with confidence estimation in air pollution problem

    Ivina, O., Nouretdinov, I. & Gammerman, A., Jul 2011, p. 45. 1 p.

    Research output: Contribution to conferenceAbstract

  105. Published

    Machine learning classification with confidence: Application of transductive conformal predictors to MRI-based diagnostic and prognostic markers in depression

    Nouretdinov, I., Costafreda, S. G., Gammerman, A., Chervonenkis, A., Vovk, V., Vapnik, V. & Fu, C. H. Y., 15 May 2011, In : NeuroImage. 56, 2, p. 809-813 5 p.

    Research output: Contribution to journalArticle

  106. Published

    Languages as hyperplanes: grammatical inference with string kernels

    Clark, A., Costa Florêncio, C. & Watkins, C., 1 Mar 2011, In : Machine Learning. 82, 3, p. 351-373

    Research output: Contribution to journalArticle

  107. Published

    A Comparison of Venn Machine with Platt's Method in Probabilistic Outputs

    Zhou, C., Nouretdinov, I., Luo, Z., Adamskiy, M., Coldham, N. & Gammerman, A., 2011, 12th INNS EANN-SIG International Conference, EANN 2011 and 7th IFIP WG 12.5 International Conference, Artificial Intelligence Applications and Innovations 2011, Corfu, Greece, September 15-18, 2011, Proceedings , Part II. . p. 483-

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  108. Published

    A novel high-throughput in vivo molecular screen for shade avoidance mutants identifies a novel phyA mutation

    Wang, X., Roig-Villanova, I., Khan, S., Shanahan, H., Quail, P. H., Martinez-Garcia, J. F. & Devlin, P. F., 2011, In : Journal of Experimental Botany. 62, 8, p. 2973-2987 15 p.

    Research output: Contribution to journalArticle

  109. Published

    An intuitive graphical visualization technique for the interrogation of transcriptome data

    Bushati, N., Smith, J., Briscoe, J. & Watkins, C., 2011, In : Nucleic Acids Research. 39, 17, p. 7380-7389

    Research output: Contribution to journalArticle

  110. Published

    Applying Conformal Prediction to the Bovine TB Diagnosing

    Adamskiy, M., Nouretdinov, I., Mitchell, A., Coldham, N. & Gammerman, A., 2011, 12th INNS EANN-SIG International Conference, EANN 2011 and 7th IFIP WG 12.5 International Conference, Artificial Intelligence Applications and Innovations 2011, Corfu, Greece, September 15--18, 2011, Proceedings , Part II. . p. 449-

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

Previous 1 2 3 Next