PDB structural analysis service

Jamie Alnasir (Developer)

Research output: Non-textual formSoftware


The PDB (Protein Databank file format) structural information service hosted at the Centre for Synthetic and Systems Biology (CSSB) at the department of Computer Science offers three online computation services for i) Computing internal Φ, Ψ, and Ω torsional angles (Phi, Phi, Omega) ii) Plotting a Ramachandran plot of Φ vs Ψ for angles in adjacent amino acid moeties iii) Listing amino-acid or Sequence information for chains within a molecule. The service is allows the end-user to upload a Brookhaven PDB file and is written in PHP with a Linux backend. The pdb-cli tools are also available for offline use on Microsoft Windows command-line/Linux
Original languageEnglish
Publication statusPublished - 1 Nov 2013

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