Centre for Systems and Synthetic Biology

Research output

Research output per year 1975 2000 2003 2005 2006 2009 2010 2011 2012 2013 2015 2016 2017 2018 2019 2020 2021 2022 2023 2024

• 514 Article
• 43 Doctoral Thesis
• 25 Chapter
• 16 Literature review
• 47 More
  • 12 Conference contribution
  • 6 Meeting abstract
  • 4 Abstract
  • 4 Other
  • 4 Poster
  • 4 Editorial
  • 2 Book
  • 2 Entry for encyclopedia/dictionary
  • 2 Book/Film/Article review
  • 2 Letter
  • 2 Review article
  • 1 Paper
  • 1 Comment/debate
  • 1 Other contribution

Research output per year

Research output per year

Search results

• 2024

  Aethionema arabicum dimorphic seed trait resetting during transition to seedlings

  Arshad, W., Steinbrecher, T., Wilhelmsson, P., Fernandez-Pozo, N., Perez Suarez, M., Merai, Z., Rensing, S., Chandler, J. & Leubner-Metzger, G., 8 Mar 2024, In: Frontiers in Plant Science. 15, 1358312.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Evidence for metabolite composition underlying consumer preference in Sub-Saharan African Musa spp.

  Drapal, M., Amah, D., Uwimana, B., Brown, A., Swennen, R. & Fraser, P., 1 Mar 2024, In: Food Chemistry. 435, 137481.

  Research output: Contribution to journal › Article › peer-review

• Functional mechanism study of the allelochemical myrigalone A identifies a group of ultrapotent inhibitors of ethylene biosynthesis in plants

  Heslop-Harrison, G., Nakabayashi, K., Espinosa-Ruiz, A., Robertson, F., Thompson, C., Hermann, K., Alabadi, D., Leubner-Metzger, G., Williams, R. S. B. & Baines, R., 8 Mar 2024, In: Plant Communications. 100846.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Ketocarotenoid production in tomato triggers metabolic reprogramming and cellular 1 adaptation: The quest for homeostasis?

  Nogueira, M., Enfissi, G., Price, E., Menard, G., Venter, E., Eastmond, P. J., Bar, E., Lewinsohn, E. & Fraser, P., Feb 2024, In: Plant biotechnology journal. 22, 2, p. 427-444

  Research output: Contribution to journal › Article › peer-review

  Open Access

• LanDis: the disease landscape explorer

  Caniza, H., Caceres, J. J., Torres, M. & Paccanaro, A., 10 Jan 2024, (E-pub ahead of print) In: European Journal of Human Genetics.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Mechanisms of seed persistence in blackgrass (Alopecurus myosuroides Huds.)

  Holloway, T., Perez Suarez, M., Chandler, J., Venceslai, N., Garcia, L., Cohn, J., Schilling, K., Seville, A., Leubner-Metzger, G. & Nakabayashi, K., 6 Apr 2024, In: Weed Research.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Plastid retrograde signaling: A developmental perspective

  Loudya, N., Barkan, A. & Lopez Juez, E., 28 Mar 2024, (E-pub ahead of print) In: Plant Cell. 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Seed priming with gas plasma activated water in Ethiopia’s “orphan” crop tef (Eragrostis tef)

  Fatelnig, L., Chanyalew, S., Tadesse, M., Kebede, W., Hussein, N., Iza, F., Tadele, Z., Leubner-Metzger, G. & Steinbrecher, T., 26 Feb 2024, In: Planta. 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• The dimorphic diaspore model Aethionema arabicum (Brassicaceae): Distinct molecular and morphological control of responses to parental and germination temperatures

  Chandler, J., Wilhelmsson, P., Fernandez-Pozo, N., Graeber, K., Arshad, W., Perez Suarez, M., Steinbrecher, T., Ulrich, K., Nguyen, T-P., Merai, Z., Mummenhoff, K., Theißen, G., Strnad, M., Mittelsten Scheid, O., Schranz, M. E., Petrik, I., Tarkowska, D., Novak, O., Rensing, S. & Leubner-Metzger, G., 22 Mar 2024, (E-pub ahead of print) In: Plant Cell.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• The role of priming and memory in rice environmental stress adaptation: current knowledge and perspectives

  Ganie, S., McMulkin, N. & Devoto, A., 15 Feb 2024, (E-pub ahead of print) In: Plant, Cell and Environment.

  Research output: Contribution to journal › Article › peer-review

  Open Access
• 2023

  Addition of Arbuscular Mycorrhizal Fungi Enhances Terpene Synthase Expression in Salvia rosmarinus Cultivars

  Leggatt, E., Griffiths, A., Budge, S., Stead, A., Gange, A. & Devlin, P., 23 Jan 2023, In: Life. 13, 2, 315.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A xanthophyll-derived apocarotenoid regulates carotenogenesis in tomato chromoplasts

  D'Ambrosio, C., Stigliani, A. L., Rambla, J. L., Frusciante, S., Diretto, G., Enfissi, E. M. A., Granell, A., Fraser, P. & Giorio, G., Mar 2023, In: Plant Science. 328, 111575.

  Research output: Contribution to journal › Article › peer-review

• Carotenoid retention during post-harvest storage of Capsicum annuum: the role of the fruit surface structure

  Holden, A., Cohen, H., Berry, H., Rickett, D., Aharoni, A. & Fraser, P., 8 Dec 2023, In: Journal of Experimental Botany. erad482.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Distinct hormonal and morphological control of dormancy and germination in Chenopodium album dimorphic seeds

  Loades, E., Perez Suarez, M., Tureckova, V., Tarkowska, D., Strnad, M., Seville, A., Nakabayashi, K. & Leubner-Metzger, G., 30 Mar 2023, In: Frontiers in Plant Science. 14, 1156794.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Dually biofortified cisgenic tomatoes with increased flavonoids and branched-chain amino acids content

  Fraser, P., 2023, (Submitted) In: Plant biotechnology journal.

  Research output: Contribution to journal › Article › peer-review

• Improved chilling tolerance in glasshouse-grown potted sweet basil by end-of-production, short-duration supplementary far red light

  Begum, F., Skinner, G., Smieszek, S., Budge, S., Stead, T. & Devlin, P., 16 Aug 2023, In: Frontiers in Plant Science. 14, 1239010.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Jasmonates, gibberellins and powdery mildew modify cell cycle progression and evoke differential spatiotemporal responses along the barley leaf

  Krasauskas, J., Ganie, S. A., Al-Husari, A., Bindschedler, L., Spanu, P. D., Ito, M. & Devoto, A., 23 Aug 2023, In: Journal of Experimental Botany. erad331.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Maize Grain Germination is Accompanied by Acidification of the Environment

  Wellmann, K., Varnskühler, J., Leubner-Metzger, G. & Mummenhoff, K., 8 Jul 2023, In: Agronomy. 13, 7, 10 p., 1819.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• The characterisation of phytoene synthase-1 and 2, and 1-D-deoxy-xylulose 5-phosphate synthase genes from red chilli pepper (Capsicum annuum)

  Berry, H., Zhou, N., Rickett, D., Baxter, C., Enfissi, E. & Fraser, P., 17 May 2023, (E-pub ahead of print) In: The Journal of Horticultural Science and Biotechnology.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• The FIBRILLIN multigene family in tomato, their roles in plastoglobuli structure and metabolism

  Fraser, P., 2023, (Submitted) In: Proceedings of the National Academy of Sciences of the United States of America.

  Research output: Contribution to journal › Article › peer-review

• The potential of Metabolomics in assessing global compositional changes resulting from the application of CRISPR/Cas9 technologies

  Drapal, M., Enfissi, E., Almeida, J., Rapacz, E., Nogueira, M. & Fraser, P., 11 May 2023, In: Transgenic Research.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  2 Downloads (Pure)

• The ‘Nigerian Diet’ and Its Evolution: Review of the Existing Literature and Household Survey Data

  Petrikova, I., Bhattacharjee, R. & Fraser, P., 17 Jan 2023, In: Foods. 12, 3, 443.

  Research output: Contribution to journal › Article › peer-review

  Open Access
• 2022

  A Chimeric TGA Repressor Slows Down Fruit Maturation and Ripening in Tomato

  Lemaire-Chamley, M., Nogueira, M., Fraser, P. & Rothan, C., Jan 2022, In: Plant and Cell Physiology. 63, 1, p. 120 -134

  Research output: Contribution to journal › Article › peer-review

• Changes in carbon allocation and subplastidal amyloplast structures of specialised Ipomoea batatas (sweet potato) storage root phenotypes

  Drapal, M., Gerrish, C. & Fraser, P., Nov 2022, In: Phytochemistry. 203, 113409.

  Research output: Contribution to journal › Article

  Open Access
  5 Downloads (Pure)

• Cold-induced secondary dormancy and its regulatory mechanisms in Beta vulgaris

  Hourston, J., Steinbrecher, T., Chandler, J., Perez Suarez, M., Dietrich, K., Turečková, V., Tarkowska, D., Strnad, M., Weltmeier, F., Meinhard, J., Fischer, U., FiedlerWiechers, K., Ignatz, M. & Leubner, G., Apr 2022, In: Plant, Cell and Environment. 45, 4, p. 1315-1332 18 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Datasets from harmonised metabolic phenotyping of root, tuber and banana crop

  Drapal, M., Perez, L., Price, E. & Fraser, P., Jun 2022, In: Data in Brief. 42, 108041.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Dual role for FHY3 in light input to the clock

  Rhodes, B., Siddiqui, H., Khan, S. & Devlin, P., 9 Jun 2022, In: Frontiers in Plant Science. 13, 862387.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Gas-plasma-activated water impact on photo-dependent dormancy mechanisms in Nicotiana tabacum seeds

  Grainge, G., Nakabayashi, K., Iza, F., Leubner-Metzger, G. & Steinbrecher, T., 16 Jun 2022, In: International Journal of Molecular Sciences. 23, 12, 17 p., 6709.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Identification of metabolites associated with boiled potato sensory attributes in freshly harvested and stored potatoes

  Drapal, M. & Fraser, P., 6 Oct 2022, (E-pub ahead of print) In: Journal of Food Composition and Analysis. 115, 104934.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Isolation and characterization of sub-plastidial fractions from carotenoid rich fruits

  Berry, H., Nogueira, M., Drapal, M., Almeida, J., Perez-Fons, L., Enfissi, E. M. A. & Fraser, P., 2022, In: METHODS IN ENZYMOLOGY. 671, p. 285-300 16 p.

  Research output: Contribution to journal › Article › peer-review

• Jasmonates and Histone deacetylase 6 activate Arabidopsis genome-wide histone acetylation and methylation during the early acute stress response

  Vincent, S. A., Kim, J. M., Perez Salamo, I., To, T. K., Torii, C., Ishida, J., Tanaka, M., Endo, T. A., Bhat, P., Devlin, P., Seki, M. & Devoto, A., 11 Apr 2022, In: BMC Biology. 20, 83 (2022).

  Research output: Contribution to journal › Article › peer-review

  Open Access
  17 Downloads (Pure)

• Machine Learning Prediction of Side effects for Drugs in Clinical Trials

  Galeano, D. & Paccanaro, A., 19 Dec 2022, (E-pub ahead of print) In: Cell Reports Methods. 2, 12, 100358.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Metabolomic approaches for the characterization of carotenoid metabolic engineering in planta

  Perez-Fons, L., Drapal, M., Nogueira, M., Berry, H., Almeida, J., Enfissi, E. M. A. & Fraser, P., 2022, In: METHODS IN ENZYMOLOGY. 670, p. 155-178 24 p.

  Research output: Contribution to journal › Article › peer-review

• Molecular mechanisms of Arabidopsis seed dormancy release by gas plasma activated water technology

  Grainge, G., Nakabayashi, K., Steinbrecher, T., Kennedy, S., Ren, J., Iza, F. & Leubner-Metzger, G., 15 Apr 2022, In: Journal of Experimental Botany.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Multilevel interactions between native and ectopic isoprenoid pathways affect global metabolism in rice

  Perez, L., Perez-Fons, L., Fraser, P. & Christou, P., Apr 2022, In: Transgenic Research. 31

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Mutations in the chloroplast inner envelope protein TIC100 impair and repair chloroplast protein import and impact retrograde signalling

  Loudya, N., Maffei, D. P. F., Bédard, J., Ali, S. M., Devlin, P. F., Jarvis, R. P. & Lopez-Juez, E., Aug 2022, In: Plant Cell. 34, 8, p. 3028-3046 19 p., koac153.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Potato virus X-delivered CRISPR activation programs lead to strong endogenous gene induction and transient metabolic reprogramming in Nicotiana benthamiana

  Selma, S., Gianoglio, S., Uranga, M., Vázquez-Vilar, M., Espinosa-Ruiz, A., Drapal, M., Fraser, P., Daròs, J-A. & Orzáez, D., Sept 2022, In: Plant Journal. 111, 6, p. 1550-1564 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Rethinking the A in FAIR Data: Issues of Data Access and Accessibility in Research

  Shanahan, H. & Bezuidenhout, L., 27 Jul 2022, In: Frontiers in Research Metrics and Analytics. 7, 912456.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Salicylic acid-mediated disturbance increases bacterial diversity in the phyllosphere but is overcome by a dominant core community

  Vincent, S., Ebertz, A., Spanu, P. D. & Devlin, P., 24 Feb 2022, In: Frontiers in microbiology. 13, 809940.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  2 Downloads (Pure)

• The chemotype core collection of genus Nicotiana

  Drapal, M., Enfissi, G. & Fraser, P., Jun 2022, In: Plant Journal. 110, 5, p. 1516-1528

  Research output: Contribution to journal › Article › peer-review

  Open Access

• The phytotoxin myrigalone A triggers a phased detoxification programme and inhibits Lepidium sativum seed germination via multiple mechanisms including interference with auxin homeostasis

  Nakabayashi, K., Walker, M., Irwin, D., Cohn, J., Guida-English, S., Garcia, L., Pavlovic, I., Novak, O., Tarkowska, D., Strnad, M., Perez Suarez, M., Seville, A., Stock, D. & Leubner-Metzger, G., 21 Apr 2022, In: International Journal of Molecular Sciences. 23, 9, 4618.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Xyloglucan remodelling enzymes and the mechanics of plant seed and fruit biology

  Steinbrecher, T. & Leubner-Metzger, G., 2 Mar 2022, In: Journal of Experimental Botany. 73, 5, p. 1253-1257 5 p.

  Research output: Contribution to journal › Article

  Open Access

  File
  98 Downloads (Pure)
• 2021

  A domestication-associated gene, CsLH, encodes a phytochrome B protein that regulates hypocotyl elongation in cucumber.

  Liu, B., Weng, J., Guan, D., Zhang, Y., Niu, Q., Lopez Juez, E., Lai, Y., Garcia-Mas, J. & Huang, D., 16 Jun 2021, In: Molecular Horticulture. 1, 3.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Aethionema arabicum genome annotation using PacBio full-length transcripts provides a valuable resource for seed dormancy and Brassicaceae evolution research

  Fernandez-Pozo, N., Metz, T., Chandler, J., Gramzow, L., Merai, Z., Maumus, F., Mittelsten Scheid, O., Theißen, G., Schranz, M. E., Leubner-Metzger, G. & Rensing, S., Apr 2021, In: Plant Journal. 106, 1, p. 275-293 19 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A tale of two morphs: developmental patterns and mechanisms of seed coat differentiation in the dimorphic diaspore model Aethionema arabicum (Brassicaceae)

  Arshad, W., Lenser, T., Wilhelmsson, P., Chandler, J., Steinbrecher, T., Marone, F., Perez Suarez, M., Collinson, M., Stuppy, W., Rensing, S., Theißen, G. & Leubner-Metzger, G., Jul 2021, In: Plant Journal. 107, 1, p. 166-181 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A transcriptomic, metabolomic and cellular approach to the physiological adaptation of tomato fruit to high temperature

  Almeida Barros da Silva, J., Perez, L. & Fraser, P., Jul 2021, In: Plant, Cell and Environment. 44, 7, p. 2211-2229

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  110 Downloads (Pure)

• Cellular and transcriptomic analyses reveal two-staged chloroplast biogenesis underpinning photosynthesis build-up in the wheat leaf

  Loudya, N., Mishra, P., Takahagi, K., Uehara-Yamaguchi, Y., Inoue, K., Bogre, L., Mochida, K. & Lopez Juez, E., 11 May 2021, In: Genome Biology. 22, 151.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Chloroplast development in green plant tissues: the interplay between light, hormone, and transcriptional regulation

  Cackett, L., Luginbuehl, L. H., Schreier, T. B., Lopez Juez, E. & Hibberd, J. M., 2 Nov 2021, (E-pub ahead of print) In: New Phytologist. 22, p. 151-167 17 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  42 Downloads (Pure)

• Machine learning and network medicine approaches for drug repositioning for COVID-19

  de Siquiera Santos, S., Torres, M., Galeano Galeano, D., Sanchez, M. D. M., Cernuzzi, L. & Paccanaro, A., 9 Nov 2021, (E-pub ahead of print) In: Cell Patterns.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices

  Alseekh, S., Aharoni, A., Brotman, Y., Contrepois, K., D'Auria, J., Ewald, J., Ewald, J., Fraser, P., Giavalisco, P., Hall, R. D., Heinemann, M., Link, H., Luo, J., Neumann, S., Nielsen, J., Perez de Souza, L., Saito, K., Sauer, U., Schroeder, F. C., Schuster, S., & 12 othersSiuzdak, G., Skirycz, A., Sumner, L. W., Snyder, M. P., Tang, H., Tohge, T., Wang, Y., Wen, W., Wu, S., Xu, G., Zamboni, N. & Fernie, A. R., 8 Jul 2021, In: Nature Methods. 18, p. 747-756 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  47 Downloads (Pure)